Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0565 ATGCAGAATTACAGGCTTAAGCAGCAGCAACAACAGCAACAGCAACAACAACAACAACAACAAGCTCTGATGCAACAAGCTCTCCTTCAACAACAATCTCTCCTTCAACAACAATCTCTCCTTCAACAACAATCTCTCTACCATCCTGGTCTCCTAGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAATATCCATACTCAAGTGACCGAGCCGCTTTTGCAAGAAGTTTTCGCAGGTACTGGTCTGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTACTTCGATCGCAGATCTGCTGCTCTTGCCATAGTTTCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAACTGGGCTTATGCTAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATATTTGTTGGTGATCTGAGTCCTGAGGTCACTGATGCTATGTTGTTTGCATGCTTTTCTGTCTACCCCAGTTGCTCAGATGCGAGGGTTATGTGGGATCAAAAGACTGGACGTTCAAGGGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCCATAAACGATTTGACTGGCAAGTGGCTTGGAAGCAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTGGCATTGAAGATAGGCCAAATTCAGACTCCAAAAGTGTGGTGGAACTAACAAATGGTTCATCCGAAGATGGTAAAGAGACATTGAACAGTGATGCTCCTGAGAATAATCCTCAATATACAACTGTCTATGTGGGTAACCTTGCTTCAGAGGTAACACAACTTGATCTTCATCGCCACTTCCATTCTCTAGGGGTTGGAGTGATAGAGGAGGTTCGTGTTCAGCGTGACAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGGTGGGGAATGCCCAGTCCATCCTATTTGGCAAACCAGTTAAGTGCTCTTGGGGGAGCAAACCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGCAACAATGCCGGGCTTCTCTGCTACCGATCTTTTACTGTATGAGCGGCAGCTAGCAATGAGCAAGATGGCTGGTGTCCATGCTTTGAATCCTTTGATGCATCCTCCTCAAGGACAACATGCTCTTAAACAGGCACCAATTGGAGCTAGCCAGATATATGATGGCGGGTTCCAGAATGTTGCTGCTGCACAGCAAATGATGTACTACCAGTAA 1329 0.4605 MQNYRLKQQQQQQQQQQQQQQALMQQALLQQQSLLQQQSLLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGLVEGCKLIRKEKSSYGFIHYFDRRSAALAIVSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEDRPNSDSKSVVELTNGSSEDGKETLNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGVGVIEEVRVQRDKGFGFVRYSTHAEAALAIQVGNAQSILFGKPVKCSWGSKPTPPGTASNPLPPPAAATMPGFSATDLLLYERQLAMSKMAGVHALNPLMHPPQGQHALKQAPIGASQIYDGGFQNVAAAQQMMYYQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0565 442 CDD RRM2_PUB1 161 235 - -
Lal6g0565 442 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 29 423 - -
Lal6g0565 442 CDD RRM1_TIA1_like 77 147 - -
Lal6g0565 442 MobiDBLite consensus disorder prediction 252 277 - -
Lal6g0565 442 Gene3D - 1 158 IPR012677 -
Lal6g0565 442 Coils Coil 1 26 - -
Lal6g0565 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 356 IPR000504 GO:0003723
Lal6g0565 442 Gene3D - 159 239 IPR012677 -
Lal6g0565 442 Gene3D - 258 360 IPR012677 -
Lal6g0565 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 149 IPR000504 GO:0003723
Lal6g0565 442 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 423 - -
Lal6g0565 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 238 IPR000504 GO:0003723
Lal6g0565 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 232 IPR000504 GO:0003723
Lal6g0565 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 340 IPR000504 GO:0003723
Lal6g0565 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 143 IPR000504 GO:0003723
Lal6g0565 442 SUPERFAMILY RNA-binding domain, RBD 59 153 IPR035979 GO:0003676
Lal6g0565 442 SUPERFAMILY beta-sandwich domain of Sec23/24 8 60 - -
Lal6g0565 442 SUPERFAMILY RNA-binding domain, RBD 269 360 IPR035979 GO:0003676
Lal6g0565 442 SMART rrm1_1 282 352 IPR000504 GO:0003723
Lal6g0565 442 SMART rrm1_1 76 145 IPR000504 GO:0003723
Lal6g0565 442 SMART rrm1_1 161 234 IPR000504 GO:0003723
Lal6g0565 442 MobiDBLite consensus disorder prediction 239 277 - -
Lal6g0565 442 SUPERFAMILY RNA-binding domain, RBD 154 244 IPR035979 GO:0003676
Lal6g0565 442 CDD RRM3_TIA1_like 281 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0565 Lal-Chr6 3631998 3637371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0565 76 349 Eukaryotic Initiation Factors Gene Family AT2G23350 31.488 3.75e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0565 K13201 - gmx:100781227 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0565 6 3631998 3637371 Lal22g0509 22 3377709 3381679 LSH