Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0564 ATGACTAGTTTCCCTGATACGGTGGTGGGTCGCCGGAGGTCCGGCAAGTCACCAGAAAAATCCAATTTCTCTCGAGCTTGTAGCCTTTTGAGTCACTTATCAAAGGAAAAGCGTAGTTCTATTGCTTCTGCCATTGAAATTGCAAATAGGGAGGATTTGCAAAATTCAGATGGGGGTTTGATATTAAATGCTTCTGCTTTGAATTTCCTTCCCCAGCTTGTGGAAAACCCTTGCATTAAGAAGTCTAATGATAGGACACCAGGGCCTGAAAGTCCTCAATTGACAATATTCTATGGTGGAAAAATGTTAGTATTTGATGCTTTTGAGCCTGAGAAAGCCACAGAGATAATGGAATTAGCCACAAAATTGGCCTCTCATAATCCCAGCATAAAAGAAACCCTTCCCAGTGCTGCTGAAGATTTGAAAGAGTTGAAAATGCCTCAAACAAACACTGCCTCTGAAACTCCTCGACCAGGAAACCAAGTTGTTGGCCCTGATATAAGATATCCAAGGAGAGCTTCACTTCTAAAATTCCTAGAGAAAAGAAAAGAAAGGGTTATTGCAAAGGGTCCTTACCAAATAAACAATCCCAACCCCATCCATGAGGGAAGCAGTACTTTAGGGGATGGTGAACCTGAAGATCAGTCTTTAGACCTTACCTTGTAG 666 0.4204 MTSFPDTVVGRRRSGKSPEKSNFSRACSLLSHLSKEKRSSIASAIEIANREDLQNSDGGLILNASALNFLPQLVENPCIKKSNDRTPGPESPQLTIFYGGKMLVFDAFEPEKATEIMELATKLASHNPSIKETLPSAAEDLKELKMPQTNTASETPRPGNQVVGPDIRYPRRASLLKFLEKRKERVIAKGPYQINNPNPIHEGSSTLGDGEPEDQSLDLTL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0564 221 Pfam tify domain 89 120 IPR010399 -
Lal6g0564 221 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 216 IPR040390 -
Lal6g0564 221 MobiDBLite consensus disorder prediction 189 221 - -
Lal6g0564 221 ProSiteProfiles Tify domain profile. 87 122 IPR010399 -
Lal6g0564 221 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 216 - -
Lal6g0564 221 SMART tify_2 87 122 IPR010399 -
Lal6g0564 221 Pfam Jas motif 171 193 IPR018467 -
Lal6g0564 221 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0564 Lal-Chr6 3628636 3630836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0564 14 185 Tify Gene Family AT1G72450 34.634 1.08e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal6g0564 tify 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0564 K13464 - gmx:100778559 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0564 6 3628636 3630836 Lal22g0508 22 3373319 3376131 LSH
Lal6g0564 6 3628636 3630836 Lal18g1098 18 14019601 14022526 LSH