Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0563 ATGGCCATAGCTGGGGTAATAGTCCTCCAGCCAAATCTCCTCTTCATCATAATCTCCATTAACATTTTTCCAATGGCATATTCTATATCAGAAGTTGAAGCTTTGATGAGTCTAAAAAAATCATTTTCCAATGCAGAAGCTCTTGATACTTGGGTGGCTGGCACTTCACCTTGCAGTGAAGATGATCAATGGGAAGGTCTTTTATGCAACAATGGCCAAGTCACCGGGCTTCGCCTAGGAGATATGGGGTTACATGGGGAAATTGATGTTGATGCATTGCATGAACTTAAGGCTCTTAGAACTATAAGCCTTGTGAAAAATTCTTTCAATGGTTCTATACCAAATCTTAGTAAAATTGGTTTCTTGAAAGCAATTTATTTGTCTGGGAATAAGATGTCAGGAGAAATTCCTCAAGATTACTTTCAAGAAATGAGGTCTTTGAAGAAATTGTGGCTTGATGGTAATGATTTCACTGGCCAAATTCCTTCATCATTGTCTAAAATGCCTCAACTTATGGAGTTACATTTGGAGAATAATCAGTTTAATGGAACTATTCCAGATCTTGATAACCCTGCATTGGTGGATTTCAATGTGTCAAACAACAAATTGGAAGGTGGAATTTCGGCTAGTTTATTCAAATTCAATGAGAGTTCCTTTAGTGGGAATTCTGGTCTTTGTGGTGAGAAATTTGGGAAAAAATGTGATGAAAAGGGAAAAAATGAGGCACCAAGTCCCATTTCGGCAGAGAAGAATGGAGACACAATCATAGTTCAAAATGGCAATGCATCTGAGACAGATAAGGGTAAGATTAGCACAACTGCAATTGCTGGCATTATAGCAGCATGTATAGTGGTTATTTTGCTTGTTGCTTATTTGTTTGTGAGATCAAGGAGAAAGAAGGGTGATGAGGATTTTGATGGTATAATTGGAAAAGAGACTAATGAAGAGGCAGTTGAAGTTCAAGTAACTGCACCAGTGAAAAGAGAAGTGGCTGCTGAATCAATGAGAAAATCAACATCTAGCAGAAAGAGTGGATCAGGACACCATCATGTTAAGGGGGTTGGAGAGCTTGTGATGATAAATGAGGAGAAGGGTATTTTTGGTTTACCAGATTTGATGAAAGCAGCTGCAGAAGTGCTAGGAAATGGAGCATTTGGATCTTCTTACAAAGCTGTAATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACTAGAGAAATGAATGCATTGGAAAAAGATAGCTTTGATGCTGAGATGAAGAAGTTTGTAAACCTTAAACACTGGAATATTTTGACACCTTTAGCTTATCATTACAGAAAGGATGAGAAACTAGTGATCTCTGAATATGTTCCCAGAGGAAGTTTACTGTTTTTGCTGCATGGTGATAGAGGACCATCACATGCTGAACTGGGTTGGCCTGCACGTTTAAAGATTATAAAGGGAATAGCTGAAGGGATGCATTATCTTCACACCGAGCTCGCTTCCTTCGATCTACCACATGGAAATCTCAAGTCCAGTAATATTCTACTTGGACCAGATTATGAACCACTTATAGTGGATTATGGTTTTAGCCATTTGATAAGCCCTGCAAATGCAACACAAGCACTATTTGCTTATAAAGCTCCTGAAGCAGCACAAGGCCAAGTCTCACATAAATGTGATGTTTATTGCCTTGGTGTTGTTATACTTGAAATACTCACTGGCAAATTCCCTTCTCAATATCTCAGCAATGGAAAGGGTGGAACTGATGTAGTGCAATGGGTTGCATCAGCAATATCTGAAGGAAGGGAATTGGAACTTCTTGATCCTGAGATTGCAACCTCAAGGAATAACTCACAAGGTGAAGTTGAACAACTACTCCATATAGGAGTTGCTTGCACTGAAAGTAACCCTCACCAACGCATAGATATAGCAGAAGCTAATAGAAGAATAAAGGAAATAAAGAATGAGGGTGGGAAAGGATCAAGAACAATAGAGGTGTTAAGAGATGGCTATGCAGATTCTCATCATGTATTAGGAGCACAAGAACACCATAGTGGTCAATCTAGGAGGAGTGATGGATCATATAGCTTTGGAAGCAAGGATAATTTTGACTTTGGCATCTCCTAG 2109 0.3926 MAIAGVIVLQPNLLFIIISINIFPMAYSISEVEALMSLKKSFSNAEALDTWVAGTSPCSEDDQWEGLLCNNGQVTGLRLGDMGLHGEIDVDALHELKALRTISLVKNSFNGSIPNLSKIGFLKAIYLSGNKMSGEIPQDYFQEMRSLKKLWLDGNDFTGQIPSSLSKMPQLMELHLENNQFNGTIPDLDNPALVDFNVSNNKLEGGISASLFKFNESSFSGNSGLCGEKFGKKCDEKGKNEAPSPISAEKNGDTIIVQNGNASETDKGKISTTAIAGIIAACIVVILLVAYLFVRSRRKKGDEDFDGIIGKETNEEAVEVQVTAPVKREVAAESMRKSTSSRKSGSGHHHVKGVGELVMINEEKGIFGLPDLMKAAAEVLGNGAFGSSYKAVMANGVAVVVKRTREMNALEKDSFDAEMKKFVNLKHWNILTPLAYHYRKDEKLVISEYVPRGSLLFLLHGDRGPSHAELGWPARLKIIKGIAEGMHYLHTELASFDLPHGNLKSSNILLGPDYEPLIVDYGFSHLISPANATQALFAYKAPEAAQGQVSHKCDVYCLGVVILEILTGKFPSQYLSNGKGGTDVVQWVASAISEGRELELLDPEIATSRNNSQGEVEQLLHIGVACTESNPHQRIDIAEANRRIKEIKNEGGKGSRTIEVLRDGYADSHHVLGAQEHHSGQSRRSDGSYSFGSKDNFDFGIS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0563 702 MobiDBLite consensus disorder prediction 329 350 - -
Lal6g0563 702 Gene3D Phosphorylase Kinase; domain 1 351 449 - -
Lal6g0563 702 ProSiteProfiles Protein kinase domain profile. 374 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0563 702 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lal6g0563 702 Pfam Protein kinase domain 378 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0563 702 Gene3D Ribonuclease Inhibitor 25 117 IPR032675 -
Lal6g0563 702 Gene3D Ribonuclease Inhibitor 118 236 IPR032675 -
Lal6g0563 702 SUPERFAMILY L domain-like 28 214 - -
Lal6g0563 702 SUPERFAMILY Protein kinase-like (PK-like) 378 642 IPR011009 -
Lal6g0563 702 Gene3D Transferase(Phosphotransferase) domain 1 450 661 - -
Lal6g0563 702 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Lal6g0563 702 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 7 652 - -
Lal6g0563 702 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0563 Lal-Chr6 3622018 3624659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0563 13 647 Receptor kinase-like Gene Family AT3G42880 46.319 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal6g0563 Pkinase 1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0563 - - lang:109337801 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0563 6 3622018 3624659 Lal22g0507 22 3369464 3372086 LSH
Lal6g0563 6 3622018 3624659 Lal18g1099 18 14029848 14032324 LSH