Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0550 ATGGGTACTGAGGATGAAAATAGAAATACTGATAACCCTGAACATGCTGACCGGAATCTGTGTTTGGAAATGGAAAGTGTAAATAATGGGGTGGCAATTGAAGGTGGTAATGAGGCTCAGTGCTTTAAGTATGATGCTGCGAATAACGGGGTGGCAATTGAAAATGGGAATGAGTTTCAGTTTTTGAAGAATGAAACTGTAAATAATAGATGGGTAATTGCTTATGGGAATGGTGTTGCAGAAGGGAATAATATTCGGTGCTTGAAGAATGAAATTGTAAATAATGAAGTGGCAGTTTCTGGTCAGAATGGTGCTGCTGAAGGCCGAGAGGTTCAGTGCTTGAAGATTGAAACTGTGAACATTGGAATGGCGATTGCTGATGGGAATTGTGTTTCTGAAGGGAAAGAAGTTCAGTGTTTGAATAATGAAACTGTAAATAATGGAATAGTAATTGCTGATAGGAACAGTGTTTCTAAAGGAAAAGAGGTTTGGTGCTTGAAGAACCAAATTGTTAGTAATGGAATGGAAATTGCTAATGGGAAAGTTGTTGTGGAAGGGGACTCTGGCAGAGTTGAATATTTGCGAACTTATAAGAGGCGTAAGCATGTGAAATCAAGTTCAGAAAGCAAAGTTCAGGTAGGCAGCAAAGGACTTGTGGAATCTGCAAGTCACCTATCAGATCAGGCTGAGTTTATTTTTACAAGCAGAAGCTTAAAAGTTATGCCGGTTAAGGAGAAGGGAAGAAACAGGGATACAATTGTTATCCTGCTTGCTGTGAAAAAACCATGTGATGTAGCTGTAGGCAATCCTTCAAAAAAATATTCACATGGACATTGGCGAAATGTTGTGCTAAACCATCTATATCATTCATTAGGTGGTAGCAATGGTGGCATAGAGGGGTGCATAAGGGAAGCACTCATGAACTATCCTAAAACTAGTTGTGCCCCTGCATTTACAGAAAATTTTAAAATTGACAAAGGTGGTCATGAATGCTATTCCCACTCTGAGCTGTTCTCTCACAGATTACAGAACGAAACTAATGGACATGCAAATATCAAGCGTAATGGATGTTCTAGTAGATTAGATGCTCGTGGTGGTACTGAGAGGTGTCAGCGCGTGTTGTGTAATATCTTAACCTCAGAAAAATTCAGTTCATTATGTAAGGTGCTACTTGAAAATTTCCAAGGAATCAAACCTGAAACGGTATTCGACTTTAGTGTCATAAACGCTAGGATGAAAGAACATGCTTATGAACATTCACCTACACTTTTCTTGTCAGATATTGAACAGGTTTGGAGAAAGCTTCAAGATACTGGAAATGAGATTGTTGCTATTACCAAGAGCCTCTCTAACATGTCAAAAGCATCCTACTGTGAGAAGGTTGGAGTTTCAGCTAACTGCTCATTCGAAGATGAAAAGCAAGTGTTGTATAACTGGGAATCCCTCTCCCAAACGAAAGCAGAGCAGACAGAAGACTGTGCTGCATATATAAGTTGCACTTGCAGGCATTGTGGAAAGAAAGCATATGACACTGATTGTTTGGTTTGTGATTCATGTGAAGAGATATACCACGTTCCCTGTATTGAGCCTTCTGTGAAAGAAATACCCCACAAAAGCTGGTTCTGTGCCAATTGTTCTGGTAAGGGAATTGGATCTCCACATGAGAAGTGTGTGCTTTGTGAAAGGTTGAACGTCCCGAACGCCCTGAACAACATTTTTGGTGAGGAAAACATCCCTACAAATGAGGAAACATTGATTGAGGTAGAAGAGAATTCAAATTGTACTCAAGATGATGGAATTCAAGTGTCCATAGGTGGGGAAAATTCACCTGAGTGCAAGATTTGTGAAGAAGGGGTGGATGGTGAAAAAATAAAAATATGTGCTCACCCTCTTTGCCCCAGTAAATACTACCATGCAAGGTGTTTGTCAAGTAAGCAGATGAAGTTGTATGCTCAATGTTGGTACTGCCCTTCTTGTTTGTGCCAAGTTTGCCTCACTGATCAAGATGATGATAACATTGTTCTCTGTGATGGCTGTGATCATGCATACCACACCTATTGCATGAAACCTCCACGAACTTCTATTCCAAAAGGGAAATGGTTCTGCAGAAAATGTGATGTAGGGATCCAAGCAATACGCCGAGCAAAAAAAGCATATGAGAGTAAGAAGTGTAGAACAGATGGAAATGTTTCAAAGCTAAATGATGACGAGGATGATAAGAAATGGAGCAATAAACGGGGACGTGAATTAAACAAAGTCGGAGGAATGGACTTGCTTTTAACCGCAGCCAATACTTTGAATGTTGAAGAGAACTTGTCTGAAACCCAGATTGAGTCAAGGATAACATGA 2349 0.4002 MGTEDENRNTDNPEHADRNLCLEMESVNNGVAIEGGNEAQCFKYDAANNGVAIENGNEFQFLKNETVNNRWVIAYGNGVAEGNNIRCLKNEIVNNEVAVSGQNGAAEGREVQCLKIETVNIGMAIADGNCVSEGKEVQCLNNETVNNGIVIADRNSVSKGKEVWCLKNQIVSNGMEIANGKVVVEGDSGRVEYLRTYKRRKHVKSSSESKVQVGSKGLVESASHLSDQAEFIFTSRSLKVMPVKEKGRNRDTIVILLAVKKPCDVAVGNPSKKYSHGHWRNVVLNHLYHSLGGSNGGIEGCIREALMNYPKTSCAPAFTENFKIDKGGHECYSHSELFSHRLQNETNGHANIKRNGCSSRLDARGGTERCQRVLCNILTSEKFSSLCKVLLENFQGIKPETVFDFSVINARMKEHAYEHSPTLFLSDIEQVWRKLQDTGNEIVAITKSLSNMSKASYCEKVGVSANCSFEDEKQVLYNWESLSQTKAEQTEDCAAYISCTCRHCGKKAYDTDCLVCDSCEEIYHVPCIEPSVKEIPHKSWFCANCSGKGIGSPHEKCVLCERLNVPNALNNIFGEENIPTNEETLIEVEENSNCTQDDGIQVSIGGENSPECKICEEGVDGEKIKICAHPLCPSKYYHARCLSSKQMKLYAQCWYCPSCLCQVCLTDQDDDNIVLCDGCDHAYHTYCMKPPRTSIPKGKWFCRKCDVGIQAIRRAKKAYESKKCRTDGNVSKLNDDEDDKKWSNKRGRELNKVGGMDLLLTAANTLNVEENLSETQIESRIT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0550 782 ProSiteProfiles Zinc finger PHD-type profile. 658 708 IPR019787 -
Lal6g0550 782 SUPERFAMILY FYVE/PHD zinc finger 660 712 IPR011011 -
Lal6g0550 782 PANTHER D4, ISOFORM A 282 770 - -
Lal6g0550 782 SUPERFAMILY FYVE/PHD zinc finger 607 659 IPR011011 -
Lal6g0550 782 SMART PHD_3 661 706 IPR001965 -
Lal6g0550 782 SMART PHD_3 500 546 IPR001965 -
Lal6g0550 782 SMART PHD_3 611 660 IPR001965 -
Lal6g0550 782 Gene3D - 376 548 - -
Lal6g0550 782 Pfam PHD-finger 501 546 IPR019787 -
Lal6g0550 782 Pfam PHD-finger 661 706 IPR019787 -
Lal6g0550 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 707 IPR013083 -
Lal6g0550 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 664 IPR013083 -
Lal6g0550 782 ProSiteProfiles Zinc finger PHD-type profile. 498 548 IPR019787 -
Lal6g0550 782 PANTHER HISTONE ACETYLTRANSFERASE 282 770 - -
Lal6g0550 782 SUPERFAMILY FYVE/PHD zinc finger 492 546 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0550 Lal-Chr6 3551401 3556615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0550 660 723 C2H2 Transcription Factor Family AT3G01460 50.000 1.64e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal6g0550 PHD 2.8e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0550 - - lang:109337790 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0550 6 3551401 3556615 Lal6g0550 6 3551401 3556615 ECH