Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0545 ATGGAACCTGAAGAGGTTAAACAAATTCCCCATAAAAATCAACACACTCAACATGAGGAAGTTAGTTCTGATTTTGGTCTAGCAATTTGCATGCATGAGCAAGATGGAACATTCCCATCACTTGAAAGTGAAAGTGAAAGTGAAAGTGGTTCTTCATCCTCCTTCGATAATGATTACTATTGCGAGGCCGATTTTTTCCTAAGCCAAGAGATTGAATCAGACCTTCAGTTTCTTGAGAGTGAAGAAAGCAATGATGATTATTATGATGAAGATGTTGACATTGATGTAGATGAAATGACTTATGAAGAGTTAATTGAGTTAGGAGATTTTATGGGAAAAGAGAAAACAGGATTATCAGCTATTGAAATTTCTTCATGCTTGCATTCTACTGAAATCAAAAGTGGAATTGATAAGTGTGTAATTTGTCAGGTTGAATATGAAAATGGTGAGGCTCTGGTGGCACTTCAATGTGAACACCCTTACCATATAGATTGTATAACCAAGTGGCTTCAAATTAAGAAACTTTGTCCAATATGCAGCATTGAAATTTCAGTTCCCAATATGGTGAATAAGAATCCTTGA 582 0.3557 MEPEEVKQIPHKNQHTQHEEVSSDFGLAICMHEQDGTFPSLESESESESGSSSSFDNDYYCEADFFLSQEIESDLQFLESEESNDDYYDEDVDIDVDEMTYEELIELGDFMGKEKTGLSAIEISSCLHSTEIKSGIDKCVICQVEYENGEALVALQCEHPYHIDCITKWLQIKKLCPICSIEISVPNMVNKNP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0545 193 MobiDBLite consensus disorder prediction 1 19 - -
Lal6g0545 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 187 IPR013083 -
Lal6g0545 193 MobiDBLite consensus disorder prediction 1 20 - -
Lal6g0545 193 Pfam Ring finger domain 137 179 IPR001841 -
Lal6g0545 193 MobiDBLite consensus disorder prediction 38 55 - -
Lal6g0545 193 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 187 - -
Lal6g0545 193 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Lal6g0545 193 SUPERFAMILY RING/U-box 99 186 - -
Lal6g0545 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 187 IPR045191 GO:0061630
Lal6g0545 193 SMART ring_2 139 179 IPR001841 -
Lal6g0545 193 MobiDBLite consensus disorder prediction 36 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0545 Lal-Chr6 3510212 3510793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0545 93 183 C3H Transcription Factor Family AT3G63530 46.465 1.31e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0545 K19045 - gmx:100777284 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0545 6 3510212 3510793 Lal6g0545 6 3510212 3510793 ECH