Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0544 ATGCAAATGTCGAAGTCTCCCTCCTCTCCCAAACAACAGCAGTCCATTTCTTCTTCTCCTTCTCAGCCTAGGGAATTTAATGAGGCAACAGGAATGGACGACCCAGAATCTACAATGGCGACAGTCGCTAATTTTGTGGAGCAATTGCATACCAACTTGTCATCACCACTTGAGAAAGAATTTATTACAGAATGCTTGCTGGGTATTGCCAGGAAAAGAAAGGATGCTAGAGCACTTATTGGTTCCCATGCCCAAGCCTTGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCTATTTCAAAAGTTAATGTTGCTGCCACTCTCAGTGTCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTAGGTGGTTGTATCCCACCATTACTGTCACTCTTAAAATATGAATCCACTGACGCCAGGAAGGCAGCAGCTGAAGCAATATATGATGTTTCCTCTGGTGGTCTTTTGGATGATCATGTTGGTATGAAGATTTTTGTTACAGAAGGTGTAGTTCCGACCTTATGGAATCAACTAAATCCAAAAAACAGGCAAGACAAAGTCGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTGTGTGGCGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATTGTGGGTCTCTTGTCTTCTGACAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTACTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATCGACTCTGGAGCAGTCAAAGCATTACTTCAACTTGTTGGTCAGGAAAACGATATTTCTGTACGAGCTAGTGCTGCTGATGCCCTAGAGGCCCTCTCTTCAAAGTCGATCAAGGCTAAGGAAGCTATTGTTAGTGAAGATGGTCTACCGATCCTTATTGGAGCTATAGTTGCTCCTTCTAAAGAGTGTATGCAAGGTGATGGTGGCCAGGCTTTACAGGAGCATGCAACTCGAGCTTTAGCCAATATATGTGGTGGTATGTCTGATTTAATACTATATCTTGGAAAACTTTCCTATTCTCCTCGTCTTTCTGCACCTCTTGGTGATATAATTGGTGCTCTTGCTTATACACTCATGGTCTATGAGGAAAAAGTTAATGTTGATGTGGAACACTTGGATGCAACTAAAATAGAGGATATTCTAGTAACACTTTTAAAGCCTCGAGACAACTTGCTGATTCAAGAACGTGTCCTTGAGGCTATGGCTAGCCTATATGGTAACATATGTCTCTCGAAGTGGCTCGATCAGGCAGATTCAAAGAAGGTTCTTATTGGACTTATAACTATGGCTGCCATTGACGTGCAAGAATATCTTATACTTTCATTGACAAGCTTGTGTTGTGGTGAGGTAGGAATATGGGAGGCCATAAAAAAGAGAGAAGGAATCCAACTACTCATATCATTACTGGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGCTCAGCTGCTAGCGATCTTAACTAACCAGGTCGATGACTGCAAGTGGGCAATCACTGCTGCCGGAGGGATTCCGCCACTGGTGCAGTTGTTGGAGACAGGTTCGCAGAGAGCAAGAGAGGAAGCAGCTAATATTTTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGGGCCATCCCGGCATTCTTGTGGTTGCTTAAGAGTGGTGGACCGAAAGGACAAGAAGCTTCTGCAATGGCACTTACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTAGGGGATTCTCCAAACTCAAAGGCCCATATAATACGAGTTCTAGGTCATGTACTTACTATGGCTTCAGCGAAGGATCTCCTGCAAAAGGGTTCTGCAGCTAACAAAGGCTTGAGATCTCTTGTTCAGGTTCTCAATTCATCGAATGAGGAAACCCAAGAATATGCAGCTTCAGTCCTCGCTGATTTATTTATCGTTAGACAAGACATTTGTGATAGTCTCACAATTGATGAGGTTGTGCTTCCTTGCATGAAGCTTCTGACTAGCAAAACTCAAGTTGTTGCCACTCAGTCAGCTCGAGCGTTAAGTGCTCTGTCCCGTCCAAGCAAAAACAAAGCTGCAAATAAGATGTCTTATATTGTAGAGGGGGATGTCGAGCCACTAATCAAGTTGGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTCTTATTGCAGCTGAGGCTCTGGCTGAAGATATTGTTTCAACTTTAATAAGAGTTCTAGCCAAAGGAACCGTCGAAGGTAAACAAAATGCATCTCGTGCGCTTCATCAATTATTAAAGCATTTCCCAGTAGGTGAAGTTCTTAAGGGGAATGCACAATGTCATTTCACGGTGCTTGCACTTGTTGATTCCTTAAGAGACATGGATATGGATGGAACTGATGCCGAAGATGCTTTAGATGTAATTGCTTTGCTAGCCAGGACCAAACAGGGTGTCAACTTTACTTACCCTCCATGGTCGGCTTTGGCTGAAATACCATTAAGTTTTGAACCCCTCATCCGCTGCCTGTCTGAGGGGCCTCCCCTTGTGCAGGACAAGGCAGTTGAAGTTCTGTCTAGGCTTTGCAGAGACCAACCAGTCATACTTGGTGATATGTTATCTACTAGTTCCAGGTCTATTGGTTCATTAGCTACTAGAATAATGAACTCCTCCAGTTTGGAAGTAAAAGTTGGTAGTGTTGCCTTACTAATTTGTGCTGCAAAGGAGAAGAAAGAGCTTTTAATGGATTTACTTGATGCTTCTGGGTTTCTAAAACCATTAATATGTTCTTTAGTTGATATGATGAAACAGAGTTCTAGCTGCTCTTCGTTAGAAATTGAAGCTCACGCTGCTAATGGTTTTATGGAGAGAAATGCATTTCAAGAATTTGATGAGTTTGATATTCCTGATCCGGCTACGGTATTGGCAAGTAATGTTGCAATGTGGTTGCTTTCAATTATTGCTTCTTTCCATATAAACAACAAACTCGGAATTATGGAAGCTGGCGGTCTCGAAGCTCTCTCCAGCAAACTTGCAAGACATACTTCAAATCCACAGGCGGAATATGAGGACACAGAAGGAATATGGATCAGTGCCTTGCTCTTGGCCATTTTATTTCAAGATGCAAATGTTGTTCTATCTCCTGCTACAATGCGCATTATACCTCCTCTGACTCTTCTGCTAAGATCGGATGAAATGATCGATAAGTATTTTGCTGCCCAGGCTATGGCTAGTCTTATTTGTAATGGTAATAAGGGAATAGATCTTGCCATTGCAAATTCCGGTGCTGTTGCTGGATTGATAGCTATTACTGGCCATATAGAGTCAGATATGCCAAACTTGTCAGGTTTATCAGAAGAATTCTCTTTGGTACAAAGCCCTGATCAAGTTGTTTTGGCTCATCTTTTCGAAATTGAAGATGTAAGAGTGGGATCTACTGCAAGAAAATCCATACCCCTCTTAGTGGATCTTTTGAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTATTGGACTTTTGATATCCATTGCAAATGGAAGTGATGCAAATAAATTAATTCTGGCTGAAGCTGGAGCTCTAGAAGCTTTGAATAAGTACCTGTCCTTGAGCCCTCAAGAATCAACTGAGGCTGCTATTTCTGAGTTATTGAGAATATTATTTTGCAATTCCGATATTGTTAAACATGAAGCATCAACAAGTTCGTTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATCATGCAGCAAGAGCACTTCATGAGCTTTTTGGTGCTGAGAGCATCAGGGACTCAGAGTTAGCTAAGCAGGCCATTCAGCCATTGGTTGACATGCTTAATACAACACCAGGGAGTGAGCAGGAGGCTGCTCTCTTGGCCTTGATCAAGTTAACCTCAGGAAATTCTTCAAAAGCATCTCTTTTTACTGATGTGGAAGGCAACCCACTTGAAAGTTTATACAGAATATTGTCTTCTGCTGCTTCATCCTTGGAACTGAAGAGTCATGCCGCACAACTCTGCTTTGCTCTTTTTGGTAATAGCAAAATCAGGGCAGATCCAATTGCTGCCGAATGCATAGAACCCCTTATATCACTCATGCACTCTGATTCTGGGACTGCAATTGAATCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGATAGAGCTAGCAGCAGCCTATAATGTTGTGGATCTCCTTGTTAGCTTTGTTTTTGGTACAAACTATCCGCTTGTTGAGGCTACCATATCTGCTCTCATCAAATTAGGCAAAGATAGAACTCCAAGCAAACTAGACATGATCAGAGCTGGCATTATTGACAATTGTCTCAGCCTACTCCAATCAGCTCCTAGCTCATTATGCTCCACAATTTCAGAGCTGTTTCGCATTTTAACTAATAGTAACGTAATTGCTATGAGTTCAGATGCTGCAGAAATTGTAGAACCCCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAGCCACAAAGTCTTGCAACCTTGAAGCTTACTCCTAGCCAGGTTATTGAACCCTTGATTTCCTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTTTTATCTCATCTTCTTGCACAAGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTTGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCAATAAAAGCGTTGGAAAAAATTTCCAAGAGCTGGCCAAAGGCAGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGATGACCCTCAACCACCACATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAACGTATTACGTTCTAATGCTGATTACTATTTTAAAGTTCCTGCGGTGGTTCTTGTTAAAATGTTGCTCTCAACACGTGACAGTACGATTACCATTGCCCTTAATGCTTTAACAGTTCATGAAACAAGTGATGCTACAAGTGCTGAACAGATGATGGAAGCTGGAGCTATAGATACACTGTTGGAACTTTTAAGATCTCATCATTGTGAAGAAGCTTCTGCTAGATTACTTGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTAACTAAGTATGCTATAGCTCCTTTATCACAGTATCTGTTAGATCCACAAACCAGATCACAGCCTGGCAAGCTTCTTGCTGCTTTAGCCCTGGGAAATATTTCCCAGAACGAGGGACATGCTCGATATAGTGAGTCTGTTTCCGCATGTCGCGCATTAATAAGTTTACTTGAAGATCAATCAGCTGAAGAAATGAAGATGGTGGCTGTATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAATAGACGAGCTGTTGCAGAAGCTGGGGGTATACTGGTGATCCAGGAATTGCTACTGTCTCCAAATACTGAAGTCGCTGGACAAGCAGCACTACTGATCAAATTTTTGTTTTCTACCCACACCCTGCAAGAATACGTGTCAAATGAGCTGATCAGATCCTTGACAGCTGCACTGGGAAGAGAGTTGTGGTCGACTGCCACGATAAATGAAGAGGTTTTGAAAACTCTGCATGTGATATTCATGAACTTCCCTAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGTGGTGAAGTGGCTCAGGACTCCGTGCTAGACACCTTTTTCTTGCTAAGACAATCTTGGTCAACTATGCCAATAGATATAGCAAAGTCTCAAGCTATGGTTGCTGCTGAAGCCATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCAAGCTTCCATGAGAGAGCAGATGCTCTTTTGCACTGCTTACCAGGTTGCTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAGCAAACTATGGGAAGCACAAATGCGTTTTGCCGGTTGACAATAGGCAATGGTCCTTCAAAACAAACTAAGGTCGTGAGTCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTGCCTCCGAAGGGCCAAAAGCTCCATATCATATGCAAAAGCAAGAATACTTTTGGCAAGTCAACTCTTGGAAGAGTAACTATTCAAATTGATAAGGTTGTGACAGAAGGGGTTTATAGTGGATTATTCAGCCTTAATCATGATGGCAACAAAGATGGTTCTTCCCGAACTCTTGAAATTGAGATTATATGGTCCAACAGGATTTCTAATGATGATATTTGA 6423 0.4225 MQMSKSPSSPKQQQSISSSPSQPREFNEATGMDDPESTMATVANFVEQLHTNLSSPLEKEFITECLLGIARKRKDARALIGSHAQALPLFINILRNGTPISKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKYESTDARKAAAEAIYDVSSGGLLDDHVGMKIFVTEGVVPTLWNQLNPKNRQDKVVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGQENDISVRASAADALEALSSKSIKAKEAIVSEDGLPILIGAIVAPSKECMQGDGGQALQEHATRALANICGGMSDLILYLGKLSYSPRLSAPLGDIIGALAYTLMVYEEKVNVDVEHLDATKIEDILVTLLKPRDNLLIQERVLEAMASLYGNICLSKWLDQADSKKVLIGLITMAAIDVQEYLILSLTSLCCGEVGIWEAIKKREGIQLLISLLGLSSEQHQEYSAQLLAILTNQVDDCKWAITAAGGIPPLVQLLETGSQRAREEAANILWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPNSKAHIIRVLGHVLTMASAKDLLQKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFIVRQDICDSLTIDEVVLPCMKLLTSKTQVVATQSARALSALSRPSKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPLIAAEALAEDIVSTLIRVLAKGTVEGKQNASRALHQLLKHFPVGEVLKGNAQCHFTVLALVDSLRDMDMDGTDAEDALDVIALLARTKQGVNFTYPPWSALAEIPLSFEPLIRCLSEGPPLVQDKAVEVLSRLCRDQPVILGDMLSTSSRSIGSLATRIMNSSSLEVKVGSVALLICAAKEKKELLMDLLDASGFLKPLICSLVDMMKQSSSCSSLEIEAHAANGFMERNAFQEFDEFDIPDPATVLASNVAMWLLSIIASFHINNKLGIMEAGGLEALSSKLARHTSNPQAEYEDTEGIWISALLLAILFQDANVVLSPATMRIIPPLTLLLRSDEMIDKYFAAQAMASLICNGNKGIDLAIANSGAVAGLIAITGHIESDMPNLSGLSEEFSLVQSPDQVVLAHLFEIEDVRVGSTARKSIPLLVDLLRPIPERPSAPPVAIGLLISIANGSDANKLILAEAGALEALNKYLSLSPQESTEAAISELLRILFCNSDIVKHEASTSSLNQLIAVLRLGSRNARYHAARALHELFGAESIRDSELAKQAIQPLVDMLNTTPGSEQEAALLALIKLTSGNSSKASLFTDVEGNPLESLYRILSSAASSLELKSHAAQLCFALFGNSKIRADPIAAECIEPLISLMHSDSGTAIESGVCAFERLLEDEQQIELAAAYNVVDLLVSFVFGTNYPLVEATISALIKLGKDRTPSKLDMIRAGIIDNCLSLLQSAPSSLCSTISELFRILTNSNVIAMSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISKSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNADYYFKVPAVVLVKMLLSTRDSTITIALNALTVHETSDATSAEQMMEAGAIDTLLELLRSHHCEEASARLLEALFNNVRVREMKVTKYAIAPLSQYLLDPQTRSQPGKLLAALALGNISQNEGHARYSESVSACRALISLLEDQSAEEMKMVAVCALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAGQAALLIKFLFSTHTLQEYVSNELIRSLTAALGRELWSTATINEEVLKTLHVIFMNFPKLHISEAATLCIPHLVGALKSGGEVAQDSVLDTFFLLRQSWSTMPIDIAKSQAMVAAEAIPILQMLMKTCPPSFHERADALLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPSKQTKVVSHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSTLGRVTIQIDKVVTEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI 2140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0544 2140 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 12 2138 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lal6g0544 2140 SUPERFAMILY ARM repeat 864 1113 IPR016024 -
Lal6g0544 2140 Gene3D - 436 548 IPR011989 -
Lal6g0544 2140 Gene3D - 30 160 IPR011989 -
Lal6g0544 2140 Gene3D - 161 420 IPR011989 -
Lal6g0544 2140 Pfam Armadillo/beta-catenin-like repeat 507 545 IPR000225 GO:0005515
Lal6g0544 2140 Gene3D - 997 1162 IPR011989 -
Lal6g0544 2140 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 259 303 IPR000225 GO:0005515
Lal6g0544 2140 Gene3D - 1594 1801 IPR011989 -
Lal6g0544 2140 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1177 1221 IPR000225 GO:0005515
Lal6g0544 2140 MobiDBLite consensus disorder prediction 1 26 - -
Lal6g0544 2140 Gene3D - 1347 1593 IPR011989 -
Lal6g0544 2140 ProSiteProfiles C2 domain profile. 1993 2110 IPR000008 -
Lal6g0544 2140 SUPERFAMILY ARM repeat 1592 2010 IPR016024 -
Lal6g0544 2140 CDD C2 2014 2104 - -
Lal6g0544 2140 Pfam C2 domain 2013 2112 IPR000008 -
Lal6g0544 2140 PANTHER - 12 2138 - -
Lal6g0544 2140 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2011 2117 IPR035892 -
Lal6g0544 2140 Gene3D - 1165 1346 IPR011989 -
Lal6g0544 2140 Gene3D - 716 981 IPR011989 -
Lal6g0544 2140 SUPERFAMILY ARM repeat 1180 1551 IPR016024 -
Lal6g0544 2140 Gene3D C2 domain 2012 2138 IPR035892 -
Lal6g0544 2140 SMART C2_3c 2013 2109 IPR000008 -
Lal6g0544 2140 SMART arm_5 1713 1751 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 115 155 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 1548 1589 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 290 340 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 1421 1461 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 160 204 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 548 588 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 1752 1795 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 462 504 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 714 754 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 248 289 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 1380 1420 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 755 795 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 506 546 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 669 709 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 1839 1879 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 627 667 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 1210 1250 IPR000225 GO:0005515
Lal6g0544 2140 SMART arm_5 205 246 IPR000225 GO:0005515
Lal6g0544 2140 MobiDBLite consensus disorder prediction 1 34 - -
Lal6g0544 2140 Gene3D - 1802 2010 IPR011989 -
Lal6g0544 2140 Gene3D - 549 715 IPR011989 -
Lal6g0544 2140 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Lal6g0544 2140 SUPERFAMILY ARM repeat 37 802 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0544 Lal-Chr6 3496172 3506832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0544 436 718 U-box Gene Family AT2G23140 26.552 3.73e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0544 - - aprc:113846793 3583.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0544 6 3496172 3506832 Lal6g0544 6 3496172 3506832 ECH