Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0530 ATGTCTCACATCGCCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCCTTCTTACACTTCCTCAACTCTGTTGAACCGGGTTCTGGGGTTGATGTTGAAGGGATTGATGTTGCTAAGGAGTGTTTGGCTGAGGCTTTTAAGCTTAACAACCATGAAACTGGTGATCATGCAAACCCTGATTCACTGATTGATTTATTCAAATCCCTTGATACAAACAAGCAATGTGAAACTATTAAGCCAGACATTGCTCATCCTCAACAACCACATTCTGTGGATGCTGCTGCTGCTTCCAGTTCATCTTTCTCTCCTCAGAATCCTGCTCAATCTCCATATCATTCCATGGCGGCAAAGTCTCTGGATGAAGATTCGATACGGAGGCGTCGCATAATTGGTAGGCTAATTTGTTTCCTTTATGGGATTCAAAATGAGTGTTTGGCGAGCCTCAATGCACTACCACAGTTGCTGCATTGTGACATGGAGGATATGTGTTCAAATCCTGGAAGTAACCTCTCTGCTTGCGAGACAGAATCTAAAGATGAACTAGGTGTACAATTCTTTGCTGCACTTGAGAAAATTGACTACTTTAGGACCAATGCTGATGGGATTGATGACCCACTGCAACTGGAGAAAGCATCCTGTTTATTGAATGATGCCTTAATGGATATGGAAAAATCTGGGTGTCCAGAGTTTAGTGTGAAGAATTTGGCTGAATCACTAAAATCGCTAGGTAACAAGGCAATGCAATCCAAACAATATCTGGGTGCAATTGAGTTGTATAACTGTGCAATTGCGCTTTATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCGTACACACAGATTGACAGATATACGGAAGCAATCCAAGATTGTCTTAAATCTATCGAGATTGATCCGTACTACAGCAAGGCATTCAGCCGCCTTGGTTTAGCTTATTATGCACAAGGAAACTACCAGGATGCTATTGATGAAGGGTTTGATAAAGCCTTGCTGCTGGACCCAACTAATGAGTCTGTTAGAGAAAATATACAGGTGGCTCGAACTAAGTTAATAGAACAATATGCACGTCAGTTTCAGAGTTCAACAGCAAGAAGCAACGCGACGAGCAATCCGACTTCAGCTACCTTTGGGATGAGCAATCCGACTTCAGCTACCTTTGGGATGAGCAATCCGACTTCAGCTACCTTTGGGATGAGCAATCCGACTTCAGCTTCCTTTGGCATGAGCAATCCGACTTCAGCTTCCTTTGGGATGAGCAATCCGACTTCAGCTACCTCTGGGACATCATCTTCCTTTACATTCACTGGCGATGATATTCCAGCAATTTTCAGGAACATGACCTCGAATTTTGTACATCCTCGCGAAAGCTAA 1380 0.4362 MSHIATDSPLSRRIVRSFLHFLNSVEPGSGVDVEGIDVAKECLAEAFKLNNHETGDHANPDSLIDLFKSLDTNKQCETIKPDIAHPQQPHSVDAAAASSSSFSPQNPAQSPYHSMAAKSLDEDSIRRRRIIGRLICFLYGIQNECLASLNALPQLLHCDMEDMCSNPGSNLSACETESKDELGVQFFAALEKIDYFRTNADGIDDPLQLEKASCLLNDALMDMEKSGCPEFSVKNLAESLKSLGNKAMQSKQYLGAIELYNCAIALYEKSAVYYCNRAAAYTQIDRYTEAIQDCLKSIEIDPYYSKAFSRLGLAYYAQGNYQDAIDEGFDKALLLDPTNESVRENIQVARTKLIEQYARQFQSSTARSNATSNPTSATFGMSNPTSATFGMSNPTSATFGMSNPTSASFGMSNPTSASFGMSNPTSATSGTSSSFTFTGDDIPAIFRNMTSNFVHPRES 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0530 459 MobiDBLite consensus disorder prediction 364 384 - -
Lal6g0530 459 Gene3D Immunoglobulin FC, subunit C 4 74 - -
Lal6g0530 459 Gene3D Tetratricopeptide repeat domain 232 387 IPR011990 GO:0005515
Lal6g0530 459 PANTHER LD24721P 7 406 - -
Lal6g0530 459 PANTHER LD24721P 7 406 - -
Lal6g0530 459 SMART tpr_5 237 270 IPR019734 GO:0005515
Lal6g0530 459 SMART tpr_5 271 304 IPR019734 GO:0005515
Lal6g0530 459 SMART tpr_5 305 339 IPR019734 GO:0005515
Lal6g0530 459 MobiDBLite consensus disorder prediction 92 113 - -
Lal6g0530 459 ProSiteProfiles TPR repeat profile. 271 304 IPR019734 GO:0005515
Lal6g0530 459 Pfam Tetratricopeptide repeat 306 339 IPR013105 -
Lal6g0530 459 MobiDBLite consensus disorder prediction 82 118 - -
Lal6g0530 459 Pfam Tetratricopeptide repeat 271 303 IPR001440 GO:0005515
Lal6g0530 459 SUPERFAMILY TPR-like 236 348 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0530 236 344 U-box Gene Family AT3G07370 31.858 5.86e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0530 K16365 - gmx:100799770 407.527