Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0501 ATGTCACAATCTTCCCCCTTTCCCAGCCACGTCGACCCCAAAATCTGGCGGACCTGTGCCGGAGCCGCCGTCAAAATTCCCAACCTCCATTCTAGGGTTTATTACTTCCCTCAAGGCCACCTCGAACATGTTTCTCCCTCTCCCTCCCCTCACTACTCCTCACTCCCCTCCTTCCCCGTCGTACACTGCCTCCTCTCTAACGTTCAATTCCTTGCCGATCCTCTCTCCGATCAGGTTTTCGCCAAACTTCTCCTCCAACCTATCCCTAACCGCTTTGTAACCGATTCGCGTAATGAAGTTGCTGGCGAGGGTGGTGACGGTGATAACTTTGTATCGTACGCTAAGATTCTCACACCTTCGGATGCTAATAACGGCGGTGGTTTCTCCGTTCCGAGGTTTTGCGCTGACTCTGTTTTACCGCCTCTGGACTTTGAGGCTGATCCTCCAGTCCAGATTCTGAACGTTACGGATGTTCACGGCAAGGTGTGGCAGTTCCGCCACATTTATCGAGGAACACCACGGCGCCACCTGCTTACCTCCGGATGGAGTAAGTTCGTGACTCAGAAGAATCTTGTTGCCGGTGATTCCGTTGTGTTCATGAAGAATTCGAAGGGGGAAGTGTTTGTTGGAATTCGTAGGGCGTTGTGGTTCTCCGGCACAACGATGAATAGGGCTGAGTATGAGGAGGATGGAGAAGGGTATAGTGGTGGTTGTTGGAGGAGAGGGACGGGGAGATTGTCAGTGAAAGTGGTTTTGCAGGCGGCAGAAGCGGCGTCGCAGGGTATGCCGTTTGAGATTGTGTATTATCCGAGGGCTGGGTGGTCGGATTTTGTGGTGAATGCTGAGGTAGTGGAGGAAGCTATGGGAAGGGCGTGGGGTCTTGGGATGAGAGTGAAGATGGCTATGGAGACAGAGGACTCGTCCAGGATGACGTGGTTTCAAGGGACAGTGACATCAGCTTCAGTCCCTGACAGTGAACCCTGGCGAGGTTCTCCTTGGCGTATGCTTCAGGTTGCGTGGGATGAACCTGAAGTTCTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCTCCACCTTCACTTCACACAGCATTCCCCCCAACAAAAAAGTTTAGAGCTGCCCAGGGTTTGGGCGTGTTAAGTGATAGAGAGGGAGGTTCCTACTTTCCTATGGCATGGTTCACTAGTTCATCGATGGGACACTTGAATAAAACATTGTTGAGATCTGAATCTTTTCCTGTGGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAAACTTTTCAATTTTACAAATGATATTGATAACTCTTATCTTCGTATAGGTAGTAGTTCTTTTGGGAACAATACAATGCCAATGTTGAAAACTGTGTCAACCGAATTAATCATCGGCAGTCCTCAATCTGAAGACTTGTCACCAAATAGCCAGAGTAGTTTGCCTTCCTCTGGCATGGACTTTGCTGGGGGTCACAACTGCAATGCTGCAAAAGTTGGCTCTGGTTCATTTCTGCTATTTGGTAAGATCATACAGCCTGTTGGAAGTGATATATGTGATGCTGGTTGCGTGGGAGATCATGGCAGTAAGGTCTGTGCTGATGGTGAAACTGAAGGCGTTGACAACCCACCAGAACATTCTTCGACTTACTTGAACTTACTCAACAGGCATGATGTCCAAAGCCACTCGAACCCACCAGTTGAAGTGTGTTATATGTGA 1731 0.4934 MSQSSPFPSHVDPKIWRTCAGAAVKIPNLHSRVYYFPQGHLEHVSPSPSPHYSSLPSFPVVHCLLSNVQFLADPLSDQVFAKLLLQPIPNRFVTDSRNEVAGEGGDGDNFVSYAKILTPSDANNGGGFSVPRFCADSVLPPLDFEADPPVQILNVTDVHGKVWQFRHIYRGTPRRHLLTSGWSKFVTQKNLVAGDSVVFMKNSKGEVFVGIRRALWFSGTTMNRAEYEEDGEGYSGGCWRRGTGRLSVKVVLQAAEAASQGMPFEIVYYPRAGWSDFVVNAEVVEEAMGRAWGLGMRVKMAMETEDSSRMTWFQGTVTSASVPDSEPWRGSPWRMLQVAWDEPEVLQNAKRVSPWQVELVSPPSLHTAFPPTKKFRAAQGLGVLSDREGGSYFPMAWFTSSSMGHLNKTLLRSESFPVGMQGARHDVFSASKLFNFTNDIDNSYLRIGSSSFGNNTMPMLKTVSTELIIGSPQSEDLSPNSQSSLPSSGMDFAGGHNCNAAKVGSGSFLLFGKIIQPVGSDICDAGCVGDHGSKVCADGETEGVDNPPEHSSTYLNLLNRHDVQSHSNPPVEVCYM 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0501 576 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Lal6g0501 576 SUPERFAMILY DNA-binding pseudobarrel domain 108 221 IPR015300 -
Lal6g0501 576 Pfam B3 DNA binding domain 114 214 IPR003340 GO:0003677
Lal6g0501 576 Gene3D - 111 215 IPR015300 -
Lal6g0501 576 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 575 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal6g0501 576 SMART B3_2 113 215 IPR003340 GO:0003677
Lal6g0501 576 CDD B3_DNA 112 213 IPR003340 GO:0003677
Lal6g0501 576 Gene3D - 293 364 - -
Lal6g0501 576 PANTHER AUXIN RESPONSE FACTOR 6 575 - -
Lal6g0501 576 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0501 Lal-Chr6 3218308 3226658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0501 10 542 B3 DNA Binding Superfamily AT1G77850 48.746 3.16e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal6g0501 B3 3.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0501 - - aip:107624033 680.633