Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0500 ATGGGCAAATATGAGCCATTCAATGAAGTTAGCATGTGGGAAGACACCTTTAAAGTTGATAGCAGCATGAATTCAATGGCTTCTCCAATGTTAATGGTGAACACTAGCATGGAGAACAAATCTGAATGTGTTCCTCATGAATCAAGGGAACCTTCTGGAGATGATCAAGAGACTACTAAAAAAGCTGTTAGTAAGATGCTAAGACGTCTAGCTCAAAATCGTGAGGCTGCTCGGAAATGTCGGCTGCGGAAGAAGGCTTATGTTCGACAATTAGAAACAAGCCGTTTGAAGCTTAAGCAATTGGAGCTGGAGATTGAGAAAGAAAAAAAGCAGGGTATGTATAAAGGCACTGCATTATATGCCAGTTATATGAGATCATATGATTATGGAGCAATAAACTCAGGGATGTCAACCTTTGAAATTCAATATGGACATTGGGTTGAAGAGCAACTTAGACAGAATGAAGAACTCAGAAATGCATTGCAAACTCATGCATCAGATGTACAACTTCATCTACTTGTTGAGCATAGCTTGAACCACTACTCAAATCTCTTCAGGATGAAAGCAGATGCTGCAAAGACTGATATCTTTTATTTAATCTCGGGTGTGTGGAAATCCCCGGTGGAACGCCTTTTTCTTTGGATTGGAGGATCCCGCCCATCACAGCTTCTGAATATTATTGTACCACAACTTGAGGCTTTGACTGATCAACAAATTGGTAGTATTAACAACCTCCGTTTATCATCTCAGCAAGCTGAAGAAGTTCTTTCATTAGGTTTGGATAAACTCCAGCAGAGTTTGGTCCACAACATAGCGGCCGATCCATTGGTTGTAGGAAAGTATGAGTATGAGATGGTTGCAGCCATGGACAAAATTGAAGCACTAGAAGGTTTTGTAAGCCAGGCAGATAACCTTAGGCAAAAAACTCTGCTGCACTTGTCTAGCATCCTTACTACTAGCCAAGCTGCTCAAGGGTTGTTAGCTATGGCGGACTACTTTCACCGTCTTCGCACTCTTAGCTCATTAAGGACTGCTCCTCCATGTGGCCCTGCCTAG 1056 0.4195 MGKYEPFNEVSMWEDTFKVDSSMNSMASPMLMVNTSMENKSECVPHESREPSGDDQETTKKAVSKMLRRLAQNREAARKCRLRKKAYVRQLETSRLKLKQLELEIEKEKKQGMYKGTALYASYMRSYDYGAINSGMSTFEIQYGHWVEEQLRQNEELRNALQTHASDVQLHLLVEHSLNHYSNLFRMKADAAKTDIFYLISGVWKSPVERLFLWIGGSRPSQLLNIIVPQLEALTDQQIGSINNLRLSSQQAEEVLSLGLDKLQQSLVHNIAADPLVVGKYEYEMVAAMDKIEALEGFVSQADNLRQKTLLHLSSILTTSQAAQGLLAMADYFHRLRTLSSLRTAPPCGPA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0500 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 63 108 IPR004827 GO:0003700|GO:0006355
Lal6g0500 351 Gene3D - 64 114 - -
Lal6g0500 351 Coils Coil 84 111 - -
Lal6g0500 351 PANTHER FACTOR TGA7, PUTATIVE-RELATED 3 345 - -
Lal6g0500 351 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Lal6g0500 351 ProSiteProfiles DOG1 domain profile. 136 346 IPR025422 GO:0006351|GO:0043565
Lal6g0500 351 SMART brlzneu 61 125 IPR004827 GO:0003700|GO:0006355
Lal6g0500 351 MobiDBLite consensus disorder prediction 42 59 - -
Lal6g0500 351 Pfam bZIP transcription factor 65 103 IPR004827 GO:0003700|GO:0006355
Lal6g0500 351 Pfam Seed dormancy control 155 228 IPR025422 GO:0006351|GO:0043565
Lal6g0500 351 Coils Coil 147 167 - -
Lal6g0500 351 SUPERFAMILY Leucine zipper domain 67 102 IPR046347 GO:0003700|GO:0006355
Lal6g0500 351 PANTHER TRANSCRIPTION FACTOR TGA9 3 345 - -
Lal6g0500 351 MobiDBLite consensus disorder prediction 38 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0500 Lal-Chr6 3208246 3212274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0500 1 350 Calmodulin-binding Proteins AT1G77920 51.099 1.61e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal6g0500 DOG1 2.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0500 K14431 - gmx:100775882 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0500 6 3208246 3212274 Lal6g0500 6 3208246 3212274 ECH
Lal6g0500 6 3208246 3212274 Lal17g0438 17 2992140 2995869 PCT
Lal6g0500 6 3208246 3212274 Lal21g0500 21 3559278 3567193 PCT
Lal17g0438 17 2992140 2995869 Lal6g0500 6 3208246 3212274 PCT
Lal21g0500 21 3559278 3567193 Lal6g0500 6 3208246 3212274 PCT