Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0492 ATGGGTCGTGTTAAACTTGAGATAAAGAGGATAGAGAATACCACCAATCGACAAGTTACATTCTCAAAGCGTAGAAACGGTCTCATCAAGAAAGCTTACGAGTTATCCATTTTATGTGACATTGATATTGCACTTATAATGTTTTCTCCATCAGGACGTCTTAGCCACTTTTCCGGCAGAAGAAGGATTGAGGATGTTTTTACTCGCTATATTAATCTTCCTGACCAAGAAAGAGATACCGCTGCAAGTTTTCCCGAGCTACCTTATCGCAGGGGTATTCAAAACAAAGAGTATTTGCTTAGGACTCTCCAACAATTGAGGAGTGAAAATGACATAGCTCTTCAGCTGGCCAAGTTCAATTTTGAATGGCCGAATAGTACTAACTTTTGCTTTCTCGTTTTCTACTGGTTCAAACAAGTCCCGGAGACATTAACTCCGAAATTGAGAACAGCTCACGAACTTCAACTGAGACGAATTCAAGCTGGAAACATAACTCATTACGAACTCGAGTCGAGTTTAATAAATCCTTATCTAGAACTCCAACAAGAAGTTAGTCGATTACAGCAACAGCTTCAATTGGCGGAGGAGCAGATAAGGATATATGAACCTGACTCATTAAAGATGACATCTATGGCGGAGCTTGAAGCAAGTGAAAAACACCTTGTAGATACCTTGACACATGTCATTCAGAGAAAGGAGTATCTGTTGAACAATCATTTGTCCTCGTATGATCAATCTGGTATTCAGGAGATGCCGACATCTTTTGATAATGTAGGTTGGTTGCATGATGGTAGTCAGAACCATACCCATATGTTTGATGCATCAGCTCCTCTAGATACTCTCAGGGATTTGTCCTCTACCGTGTATGGTTCATTTTCACAAGGAACTAGTTCAAATGTTGATCCACGAGGCATGGCAGAGTACCAGGTTACAAATACAAGTGATGGGAACCTTACAACATGGCCTCAAGGATTCACAATGTATCCTAATATTCAGCATATGGTGGGACATGACATGCAAGATATGTTGCCACATAGTCAGGTGAACACCACCAACTCACACGTGGAACCACCTAAGAACGATTCTGCAGAATATGATTGCAAATCTCATCATCAGCTTAATGCTCAATCGCACATGCTAAATTGA 1146 0.4066 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVFTRYINLPDQERDTAASFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLAKFNFEWPNSTNFCFLVFYWFKQVPETLTPKLRTAHELQLRRIQAGNITHYELESSLINPYLELQQEVSRLQQQLQLAEEQIRIYEPDSLKMTSMAELEASEKHLVDTLTHVIQRKEYLLNNHLSSYDQSGIQEMPTSFDNVGWLHDGSQNHTHMFDASAPLDTLRDLSSTVYGSFSQGTSSNVDPRGMAEYQVTNTSDGNLTTWPQGFTMYPNIQHMVGHDMQDMLPHSQVNTTNSHVEPPKNDSAEYDCKSHHQLNAQSHMLN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0492 381 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lal6g0492 381 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 119 - -
Lal6g0492 381 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 175 328 - -
Lal6g0492 381 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal6g0492 381 MobiDBLite consensus disorder prediction 344 358 - -
Lal6g0492 381 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lal6g0492 381 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 119 - -
Lal6g0492 381 PANTHER SERUM RESPONSE FACTOR HOMOLOG 175 328 - -
Lal6g0492 381 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal6g0492 381 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal6g0492 381 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal6g0492 381 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal6g0492 381 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal6g0492 381 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal6g0492 381 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lal6g0492 381 Coils Coil 177 197 - -
Lal6g0492 381 MobiDBLite consensus disorder prediction 344 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0492 Lal-Chr6 3153563 3157700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0492 1 347 Type I MADS-box Gene Family AT1G22130 49.441 3.04e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal6g0492 SRF-TF 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0492 - - pvu:PHAVU_008G170400g 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0492 6 3153563 3157700 Lal6g0492 6 3153563 3157700 ECH