Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0485 ATGACATGGTCAAATGACAGCCTGAAGATAGTGACAACGTTAGAAACACAGACACTTGACGAACTGGTACGCCACGTGTTCTCTATCGAACGGAGTCTCCGTCATGTGTCCAATGCTCAGTGGTTCTCACCTTATCATGGTGAAACTGTCTTGCGTTTTTCCCCTTTTCATCTTTCAATCAGCCAAGAGGCTAAAATGGATTTCTTCAACAGCAACACACAAGTTGAGTCAGATCCTTTCAGAGGTGAGTTAATGGAAGTTCTTGCACCTTTTATGAAAAGTTCTTTCACAACACCAACTCCCTCTCTACCCTCACCCCCTTCTTCAATTTCATACCTACCTTCTACTTCTTACTCTTCTACCCCTTCCCCTACCTACTTTAACTCCTCTTCTTCACTCCCTATCCAGCCCAATTTCAACACAGAAAGTTGCCCAACAATGATGACCCATTTATTTGACACTGGATCATCAAACAGCCAAAATTTCATAGGCTTTGAGCAACCAAGTTCTGTGCTTGGGCTGAACAACCTAACAACATCTCAGATTAACCAGATCCAAGCCCAAATTCTGCTCCACGCCCAACAGAACAACAACAACAACATCAACAGTAATAGCAACACACTCAGCTTCCTGTGTCCCAAACCTGTCCCAATGAAGCAAGTGGGCTTGCCTCCAAAGCCCAAGAAGCTGTACAGAGGGGTAAGGCAAAGGCATTGGGGGAAATGGGTGGCTGAGATAAGACTCCCAAAGAACAGGTCAAGGCTTTGGCTTGGTACCTTTGATACTGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCAGCATACAAGCTCAGAGGTGACTTTGCAAGACTTAACTTCCCTAACCTGAAGCACCAAGGTTCATGTGTTGGTGGTGCTTTTGGAGAGTACAAGCCTTTGCATTCTTCTGTATATGCAAAGCTTGATGCTATCTGTGATGATTTGCAGAAACAAGGGAAGCCAGAGAAGCCTGTGAGGTCTTCTAAGAAACCAAAAGTTAGTTCAAAGGAAGAGACAAAGCCACAGTTGGAGAACAACAACAATAGCAACAACAGCAAGGTGGAAACTTTATTGTCTCCTGTTGTGACAGATAGTGAAGGCTCTTCAGGGTCTTCTCCTCTTTCTGATTTTACATTTGATGATTTCACTGAGCCACAGTGGGATACTCCTTCAGAACATTTTAATCTGATGAAGTTCCCATCTTATGAGATTGACTGGGATTCTCTCTGA 1248 0.4391 MTWSNDSLKIVTTLETQTLDELVRHVFSIERSLRHVSNAQWFSPYHGETVLRFSPFHLSISQEAKMDFFNSNTQVESDPFRGELMEVLAPFMKSSFTTPTPSLPSPPSSISYLPSTSYSSTPSPTYFNSSSSLPIQPNFNTESCPTMMTHLFDTGSSNSQNFIGFEQPSSVLGLNNLTTSQINQIQAQILLHAQQNNNNNINSNSNTLSFLCPKPVPMKQVGLPPKPKKLYRGVRQRHWGKWVAEIRLPKNRSRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAICDDLQKQGKPEKPVRSSKKPKVSSKEETKPQLENNNNSNNSKVETLLSPVVTDSEGSSGSSPLSDFTFDDFTEPQWDTPSEHFNLMKFPSYEIDWDSL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0485 415 Gene3D AP2/ERF domain 230 288 IPR036955 GO:0003700|GO:0006355
Lal6g0485 415 SUPERFAMILY DNA-binding domain 230 287 IPR016177 GO:0003677
Lal6g0485 415 MobiDBLite consensus disorder prediction 323 345 - -
Lal6g0485 415 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Lal6g0485 415 PRINTS Ethylene responsive element binding protein signature 253 269 IPR001471 GO:0003700|GO:0006355
Lal6g0485 415 SMART rav1_2 230 293 IPR001471 GO:0003700|GO:0006355
Lal6g0485 415 Pfam AP2 domain 231 279 IPR001471 GO:0003700|GO:0006355
Lal6g0485 415 ProSiteProfiles AP2/ERF domain profile. 230 287 IPR001471 GO:0003700|GO:0006355
Lal6g0485 415 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 66 414 - -
Lal6g0485 415 MobiDBLite consensus disorder prediction 346 389 - -
Lal6g0485 415 CDD AP2 229 289 IPR001471 GO:0003700|GO:0006355
Lal6g0485 415 MobiDBLite consensus disorder prediction 323 389 - -
Lal6g0485 415 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 66 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0485 Lal-Chr6 3102309 3104129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0485 82 415 AP2-EREBP Transcription Factor Family AT1G78080 51.585 4.76e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal6g0485 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0485 K09286 - gmx:732559 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0485 6 3102309 3104129 Lal6g0485 6 3102309 3104129 ECH
Lal22g0451 22 2950290 2952599 Lal6g0485 6 3102309 3104129 LSH
Lal6g0485 6 3102309 3104129 Lal17g0423 17 2851831 2853454 PCT
Lal6g0485 6 3102309 3104129 Lal21g0491 21 3493589 3494635 PCT
Lal6g0485 6 3102309 3104129 Lal4g0376 4 2565598 2566632 PCT
Lal17g0423 17 2851831 2853454 Lal6g0485 6 3102309 3104129 PCT
Lal21g0491 21 3493589 3494635 Lal6g0485 6 3102309 3104129 PCT
Lal4g0376 4 2565598 2566632 Lal6g0485 6 3102309 3104129 PCT