Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0483 ATGAAGAACCAGAATGTGGTGGATCCAGTTGCGAAAACACGTGTTAACACACTTGTGGCATTTGCAAACTCAACTAATCTACTCAAATCATCTATAACAGTTACTTCCCTTGGTGGGTTTTGGGGTCTTTACCCCAAAAAGCTTATGAAAACGTTGAAGAATAGTAAAGGAGATGCTAAAGTAAACACCTTCATTGATTCAATGAGAGCATCGTCTCCTACTAGAACCAAATCAGAAGAAAACAAAGACAAAACTCCTACTTGGATTCTTTATCATCCTTCAGCGCTGAACATGTTTGATGAAATAGTATATAACTCGAGAGGGAAACAGATTGTAACTTTTCTTGACTATGATGGAACTCTCTCACCAATTGTTGCAGATCCAGATAAAGCATTCATGACTGAAAAGATGAGAGCAACCCTCAAGGATGTAGCAATGCATTTTCCCACCGCCATAGTGAGTGGAAGGTCCCTAGACAAGGTATATAACTTTGTGCAATTGACAGAATTGTACTATGCAGGAAGCCATGGCATGGACATAAAGGGACCAACAAAATGCCGAAGTCATAAGAAAAACAATGAAGCAGTACTCTTCCAAGCTGCTAGTCAATTTCTACCCATGATCAATGAGGTTTACAAGATCTTGGAAGAAAAAACAAAATGCGTTCCGGGTGCTACGGTAGAAAGTAACAAGTTTTGTTTGTCTGTGCATTTTCGCTGTGTTGACGAAAAGAATTGGGCATCATTGGCGCAGAAAGTTAGATCAGTGTTAAAAGAATACCCAAAGCTTAGGCTTAGCCAAGGTAGAAAAGTGCTAGAGATACGACCATCCATAGAATGGGACAAGGGCAAAGCTCTTGAATTCTTATTAGAATCATTAGGATACGGTAATTCTAATAATGTGTTTCCAATCTATATCGGTGATGATCGAACTGACGAGGACGCTTTTAAGGTTTTACGCAATAGGGGTCAAGGGATTGGGATTCTTGTATCTCAAATTCCAAAAGAAACAAACGCTTCCTACACTTTGCAAGATCCATCTGAGGTTTACCAATTTTTGCAGCGCTTGGTGGAGTGGAAAAGAATGAGTTCTCACTGTTATAAGTTGTAG 1110 0.3955 MKNQNVVDPVAKTRVNTLVAFANSTNLLKSSITVTSLGGFWGLYPKKLMKTLKNSKGDAKVNTFIDSMRASSPTRTKSEENKDKTPTWILYHPSALNMFDEIVYNSRGKQIVTFLDYDGTLSPIVADPDKAFMTEKMRATLKDVAMHFPTAIVSGRSLDKVYNFVQLTELYYAGSHGMDIKGPTKCRSHKKNNEAVLFQAASQFLPMINEVYKILEEKTKCVPGATVESNKFCLSVHFRCVDEKNWASLAQKVRSVLKEYPKLRLSQGRKVLEIRPSIEWDKGKALEFLLESLGYGNSNNVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSQIPKETNASYTLQDPSEVYQFLQRLVEWKRMSSHCYKL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0483 369 Gene3D - 229 368 IPR023214 -
Lal6g0483 369 Gene3D - 111 207 IPR023214 -
Lal6g0483 369 SUPERFAMILY HAD-like 114 360 IPR036412 -
Lal6g0483 369 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 114 321 IPR006379 -
Lal6g0483 369 TIGRFAM T6PP: trehalose-phosphatase 109 357 IPR003337 GO:0003824|GO:0005992
Lal6g0483 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 369 - -
Lal6g0483 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 369 IPR044651 GO:0004805|GO:0005992
Lal6g0483 369 Pfam Trehalose-phosphatase 114 347 IPR003337 GO:0003824|GO:0005992
Lal6g0483 369 CDD HAD_TPP 114 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0483 Lal-Chr6 3081580 3084205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0483 100 353 Trehalose Biosynthesis Gene Families AT1G23870 26.415 8.93e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0483 K01087 - gmx:100792915 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0483 6 3081580 3084205 Lal6g0483 6 3081580 3084205 ECH
Lal22g0449 22 2933525 2937182 Lal6g0483 6 3081580 3084205 LSH
Lal6g0483 6 3081580 3084205 Lal17g0420 17 2837743 2840201 PCT
Lal17g0420 17 2837743 2840201 Lal6g0483 6 3081580 3084205 PCT