Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0473 ATGGCTGATTCACTAACAGTTATGGTTGATTCTCCACCTAAACCTGAATTCCCTCCTGAAAAAGCACATAGACAAAGAAAGTCCAATCAGGACCAAATAGAGCCTGAACACTCTCCATCTAACATTCAAAAGGCTATTGCTGAGTTCGTAGGTACATACATTCTTATATTTGCAGGGTGTGGTGCTGCTCTTGTTAACGAGAGGTTGCCACTTACAATAGTAGGCATAGCTATGGTTGCGGGTCTAGCTTTGACAGTGGCTTTTTATTCAGTTGGTCATGTTTCTGGTGGTCATTTCAATCCTGCAGTTACAATTGCTTTGGCAACAGTGCGAAAAATTCAATTGAAACTTGTACCTATTTATGTGTTGTGCCAGTTTATGAGTGCAACACTGGCCATCTTCACCCTCAAATTGTTGTATCATGATAAGGTCGATATTGGAGTGACAGTGACTCAATTCACCAATTCAACTTCTCACCTTGAAGCTTTGGTGTGGGAATTCATAATCACTTCTATACTCATGCTCACTATTTGTGGTGTTGCCACTGATCACAGAGGGAGCAAAGACCTTGCAGGAGCTGCAATAGGCATTTCAGTTCTCATTAACGTCATCATTGCTGGGCCCATTACTGGAGCATCCATGAATCCTGCAAGGAGTTTAGGCCCTGCCATAGTCTCTGGTATTTACAAAAACATTTGGGTTTATCTCATAGGTCCTACTCTGGGAGCTATCTTTGCAACTGTGCTTTACAAGTTCCTAAGGGTATCCCACCCAGCTAAACCTGAAGACCGCACCTGA 798 0.4273 MADSLTVMVDSPPKPEFPPEKAHRQRKSNQDQIEPEHSPSNIQKAIAEFVGTYILIFAGCGAALVNERLPLTIVGIAMVAGLALTVAFYSVGHVSGGHFNPAVTIALATVRKIQLKLVPIYVLCQFMSATLAIFTLKLLYHDKVDIGVTVTQFTNSTSHLEALVWEFIITSILMLTICGVATDHRGSKDLAGAAIGISVLINVIIAGPITGASMNPARSLGPAIVSGIYKNIWVYLIGPTLGAIFATVLYKFLRVSHPAKPEDRT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0473 265 Gene3D Glycerol uptake facilitator protein. 13 264 IPR023271 -
Lal6g0473 265 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lal6g0473 265 Pfam Major intrinsic protein 38 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 MobiDBLite consensus disorder prediction 16 33 - -
Lal6g0473 265 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 TIGRFAM MIP: MIP family channel proteins 47 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 CDD MIP 43 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal6g0473 265 MobiDBLite consensus disorder prediction 1 38 - -
Lal6g0473 265 PANTHER MAJOR INTRINSIC PROTEIN 1 263 - -
Lal6g0473 265 PANTHER AQUAPORIN NIP2-1 1 263 IPR034294 -
Lal6g0473 265 SUPERFAMILY Aquaporin-like 38 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0473 Lal-Chr6 3009519 3011081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0473 16 256 Major Intrinsic Protein MIP AT5G37810 45.098 2.07e-63 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0473 K09874 - gmx:100798380 392.504