Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal6g0472 | ATGGATAAATTATGCTGTTTTAAGTCCCCTTTCTCTCAGCATGTATCATCAGGATCTTCAACGAGCACTGGTAAGGGGAAAAATTATGAAGGGTCAATGAAGTATGGTTTCGCCCTAGTGAAAGGTAGAGCTAATCATCCAATGGAGGATTATCATGTTGCCAAGTTTGTGCAGATACAGGAAAAAGAATTGGGTTTGTTTGCAATTTATGATGGTCATTTGGGAGACCGTGTGCCTGCTTACTTGCAGAAAAATTTGTTTTCGAACATTTTAAAGGAGGATAAATTTTGGGATGACCCTGCTGCTTCTATTTCAAAAGCATATAAGAGAACAGATCGGGCAATTCTTTCGCATAGTTCTGATTTGGGGCATGGTGGATCAACAGCTGTAACTGCAATATTAATCAACGGGCAAAGGCTATGGATAGCAAATGTCGGAGATTCACGTGCAGTGCTTTCAAGAAAAGGTCAAGCAGTACAAGTGACTATAGATCATGAGCCCAACACAGAACGAGGAATCATTGAAAATAAAGGTGGTTTTGTCTCCAACTTGCCAGGTGATGTGCCTAGAGTGAATGGGCAACTAGCTGTTGCTCGTGCATTCGGAGACAAGAGCCTCAAGTTACATTTGCGATCAGACCCCGATGTACAGAGTAATGATATAGATATTGATACCGATATTCTAATTCTTGCAAGTGATGGACTTTGGAAGGTGATGCCTAATCAAGAGGCAGTGGATATTGCTAGAAGGATAAGAGACCCATTGAAAGCAGCCAAACAATTAATAGCTGAAGCATTAAAAAGAGAAAGTAGAGATGATATATCTTGTGTGGTAGTTAGATTTAGGTGTTGA | 852 | 0.4038 | MDKLCCFKSPFSQHVSSGSSTSTGKGKNYEGSMKYGFALVKGRANHPMEDYHVAKFVQIQEKELGLFAIYDGHLGDRVPAYLQKNLFSNILKEDKFWDDPAASISKAYKRTDRAILSHSSDLGHGGSTAVTAILINGQRLWIANVGDSRAVLSRKGQAVQVTIDHEPNTERGIIENKGGFVSNLPGDVPRVNGQLAVARAFGDKSLKLHLRSDPDVQSNDIDIDTDILILASDGLWKVMPNQEAVDIARRIRDPLKAAKQLIAEALKRESRDDISCVVVRFRC | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal6g0472 | 283 | CDD | PP2Cc | 33 | 281 | IPR001932 | - | |
| Lal6g0472 | 283 | SMART | PP2C_SIG_2 | 45 | 281 | IPR001932 | - | |
| Lal6g0472 | 283 | SMART | PP2C_4 | 30 | 279 | IPR001932 | - | |
| Lal6g0472 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 281 | IPR001932 | - | |
| Lal6g0472 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C 10-RELATED | 1 | 282 | - | - | |
| Lal6g0472 | 283 | Pfam | Protein phosphatase 2C | 43 | 274 | IPR001932 | - | |
| Lal6g0472 | 283 | Gene3D | - | 29 | 283 | IPR036457 | - | |
| Lal6g0472 | 283 | SUPERFAMILY | PP2C-like | 30 | 282 | IPR036457 | - | |
| Lal6g0472 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal6g0472 | Lal-Chr6 | 3000973 | 3005022 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal6g0472 | 1 | 282 | PP2C-type Phosphatase Gene Family | AT1G22280 | 70.139 | 8.32e-145 | 406 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal6g0472 | K17506 | - | gmx:100797292 | 457.988 |
Event-related genes