Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0469 ATGGCTTACCAACATTATCGATCACAGTTTGGAGACACAACATTCACCAAAGTCTTTGTTGGAGGACTAGCTTGGGAGACTCCAACTGAAGAAATGCGTAAATATTTTGAGCAGTTTGGAGACATTCTTGAAGCTGTCATTATCACCGATAAGAACACTGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCATGAATCAGCTAGAAGGGCTTGTGCAGATTCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGGCCTAGACCATCACCACCGAGAGGAAGAGGTACATTTCAAGGTGGAGGAGGGACGGGGACAGTACAGGGTGCAGGAACATATAGTGGTGTTCCGGCAGCAGGACCACCGGCACTGTCACCACCACCACTATTGTACCCACAACCATATGGCTACCCTACCTACACTCCTGATTATGGTTACCACCAAGCCACAATGTACAACCCACAAATTCAGCAAGCACAATACTATCAACAACTTTATGGAGCGTCAACATCCACCATAGGTTCTCCATATTACTATGGATATTCTGTACAAGCACCTAGGGGTACATTTTCTACACCCCAAACACATCGTTTGCCAGCTGGACCATCTTATATATACTACCCTACTTCACCTATGGAAGCCTCTTCTGCATTTCGTCCACCTTATCACCCACCACCAAGGCAAATCCCTATGTCCCCTAGTGATTCACAGAGTCAGCAGCGTACCTCATCAGAGACAACCCCTGGAGTAGTTGTAACTTCAGAAAGTTCGAATACTCAAGGGAACAGCTAA 819 0.453 MAYQHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDHESARRACADSNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGGGTGTVQGAGTYSGVPAAGPPALSPPPLLYPQPYGYPTYTPDYGYHQATMYNPQIQQAQYYQQLYGASTSTIGSPYYYGYSVQAPRGTFSTPQTHRLPAGPSYIYYPTSPMEASSAFRPPYHPPPRQIPMSPSDSQSQQRTSSETTPGVVVTSESSNTQGNS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0469 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lal6g0469 272 MobiDBLite consensus disorder prediction 241 272 - -
Lal6g0469 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lal6g0469 272 PANTHER - 1 263 - -
Lal6g0469 272 MobiDBLite consensus disorder prediction 224 272 - -
Lal6g0469 272 Gene3D - 4 125 IPR012677 -
Lal6g0469 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lal6g0469 272 PANTHER GEO13361P1-RELATED 1 263 - -
Lal6g0469 272 MobiDBLite consensus disorder prediction 91 128 - -
Lal6g0469 272 CDD RRM_RBM24_RBM38_like 16 91 - -
Lal6g0469 272 SUPERFAMILY RNA-binding domain, RBD 12 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0469 Lal-Chr6 2981369 2985982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0469 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 1.22e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0469 K25006 - gmx:100787086 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0469 6 2981369 2985982 Lal6g0469 6 2981369 2985982 ECH
Lal18g1153 18 14432501 14437541 Lal6g0469 6 2981369 2985982 LSH
Lal22g0442 22 2867991 2874324 Lal6g0469 6 2981369 2985982 LSH