Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0459 ATGGTGAGGACACACAGAAAGCTCTTTCCTTCAGAAACTAGTGCAAACCAAACCCAAAATTGTTATGGAGTTTGTGACCAAGCATGCCCTTACAATTGTGACTCTTACCCAGGCTACTACTTCCCTCCACCACCATCACCACCATTTATTGATCACTCAAACCAAGTTAACCATGTTCCTTCTTACATGATCATCCTTGTTTCTTTATTCACACTCATTTTTGCTGTTGCTGCTTTCTATGTGATCAAAGTGAAGTGTTATAGTGACTTATGTGGCAGGAGAGTGAATAGATCAATTCCTTCTCAATCAGACAACAATGAACTGTTTGTAAATGAGAACCAAGTTGATCATCCTGTGTGGCTCATCACCACAGTTGGTTTACAGCAGTCAATCATAAATTCCATCACAGTTTTTAAGTACAAAAAGGATGAAGGGTTGATCGAAGGAACCGAGTGTTCGGTCTGTTTGAATGAGTTCAGGGAAAGTGAAACCTTAAGATTATTGCCCAAGTGCAATCATGCTTTTCATATTCCTTGTATTGACACTTGGTTAAGGTCTCACATCAATTGTCCTCTTTGTCGAGCTGGTATTGTCTCTAGTAACAATGTTAGTGTTACAACTGAAGCAGGAATGTCAAATATGGCTTCAACAGAGCAAGAAAGTGTTAACTTGGGAAGAAATCAAGAGACTCAGATGGAGAATTAA 705 0.3929 MVRTHRKLFPSETSANQTQNCYGVCDQACPYNCDSYPGYYFPPPPSPPFIDHSNQVNHVPSYMIILVSLFTLIFAVAAFYVIKVKCYSDLCGRRVNRSIPSQSDNNELFVNENQVDHPVWLITTVGLQQSIINSITVFKYKKDEGLIEGTECSVCLNEFRESETLRLLPKCNHAFHIPCIDTWLRSHINCPLCRAGIVSSNNVSVTTEAGMSNMASTEQESVNLGRNQETQMEN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0459 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Lal6g0459 234 Pfam Ring finger domain 151 194 IPR001841 -
Lal6g0459 234 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lal6g0459 234 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 234 IPR044675 -
Lal6g0459 234 SUPERFAMILY RING/U-box 135 199 - -
Lal6g0459 234 SMART ring_2 152 193 IPR001841 -
Lal6g0459 234 MobiDBLite consensus disorder prediction 212 234 - -
Lal6g0459 234 CDD RING-H2_PA-TM-RING 151 194 - -
Lal6g0459 234 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0459 Lal-Chr6 2911917 2912621 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0459 3 207 C3H Transcription Factor Family AT1G72220 48.319 7.90e-59 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0459 - - aprc:113847030 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0459 6 2911917 2912621 Lal6g0459 6 2911917 2912621 ECH
Lal22g0430 22 2791802 2792953 Lal6g0459 6 2911917 2912621 LSH