Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0457 ATGGCCCTAGAAGCTGTGGTTTTCCCACAAGATTCATTTAATTATGGTTGCAACAAAGACTATTTAATAGGAGAAGCAAGTGGTGGAACCTACGGTTTCCAAAGAGCAGAAGAAGAGAGAGCCCTTATTGGAATCATCAACAATAACATAGAGCAAAGTCTCCATGCAAATTGGGATTCTTCTCCTACAGTGTTACAAAATAACAAGGAGAAATGGGATTCAAACTCTTCCCCTGAGACTGCCACTGCAGATCAATATTTGTTAGGAATTTTGCCTCCTCCTCCCTCCGTGGAAACCACTGTCACCACCACCACCACAACCACTACTGGTCGTCGCAAACGACGCCGCACGAAGAGTGCTAAGAACAAAGAGGAAATTGAGAACCAGAGGATGACACACATTGCAGTTGAGCGCAATAGAAGGAAACAAATGAATGAGTACTTGGCTGTGCTTAGATCCTTGATGCCTGCTTCTTATGTACAAAGGAGTGATCAAGCTTCTATTATAGGAGGTGCCATTAACTTTGTGAAGGAGCTAGAGCAGACTTTACAGTGCATGAAAGGCCAAAAGAAAACAAAGCAACAACCTCTTCCTGAGAATGGCTTCCTTTGCTCATCATCACCCTTTGCTGAGTTCTTCATATTCCCTCAGTACTCAACGCGTGCAACTCAAGGCATGAACCAACCCACGATCGATGTTATGATGACACAAAACCAGAACCAATCATGTGCCATGGCAGACATAGAAGTAACCTTGGTGGATAGCCATGCAAACATAAAGATACTATCAAAGAAACAACCTCGACAGCTTATGAAGATTGTTGTTGGGATACAAAGTCTTAACCTCAACATTCTCCACCTTAATCTTACTACTGTGGATGATATGATCCTTACCTCCCTTAGTGTAAAGGTTGAGGAAAGATGTCAGATGAATTCAGTGGATGAAATTGCATATGCTGTGAATCTACTATTACAAACAGTGCAGGAGGAAACAGCTTTGAGATGA 1005 0.4239 MALEAVVFPQDSFNYGCNKDYLIGEASGGTYGFQRAEEERALIGIINNNIEQSLHANWDSSPTVLQNNKEKWDSNSSPETATADQYLLGILPPPPSVETTVTTTTTTTTGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPASYVQRSDQASIIGGAINFVKELEQTLQCMKGQKKTKQQPLPENGFLCSSSPFAEFFIFPQYSTRATQGMNQPTIDVMMTQNQNQSCAMADIEVTLVDSHANIKILSKKQPRQLMKIVVGIQSLNLNILHLNLTTVDDMILTSLSVKVEERCQMNSVDEIAYAVNLLLQTVQEETALR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0457 334 MobiDBLite consensus disorder prediction 92 125 - -
Lal6g0457 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 203 IPR036638 GO:0046983
Lal6g0457 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 179 IPR011598 GO:0046983
Lal6g0457 334 SMART finulus 134 185 IPR011598 GO:0046983
Lal6g0457 334 Pfam Helix-loop-helix DNA-binding domain 129 180 IPR011598 GO:0046983
Lal6g0457 334 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 332 - -
Lal6g0457 334 CDD bHLH_AtFAMA_like 131 196 - -
Lal6g0457 334 PANTHER MAX DIMERIZATION, MAD 1 332 - -
Lal6g0457 334 Gene3D - 118 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0457 Lal-Chr6 2908700 2910750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0457 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.479 3.41e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0457 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0457 - - gmx:100797856 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0457 6 2908700 2910750 Lal6g0457 6 2908700 2910750 ECH
Lal6g0457 6 2908700 2910750 Lal17g0397 17 2666048 2669219 PCT
Lal6g0457 6 2908700 2910750 Lal21g0467 21 3323838 3326788 PCT
Lal17g0397 17 2666048 2669219 Lal6g0457 6 2908700 2910750 PCT
Lal21g0467 21 3323838 3326788 Lal6g0457 6 2908700 2910750 PCT