Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0455 ATGGGTGACATGCATGCAAATATATCGTTCATGAATAATAATATTTTCCAATTGCATCTCCAAAAGCAAAGTCACGTTTTCAGTGTATATAGTTTCATCCATAGCCATTCGTTCCTTGCTTTGTTCTTTATTATTGTTTTCATACAAACCTCATCACCAGCAACTGCTCAATTCGTGGTAGGAACAGAAGTGGACCCTAACACCAATAATAAATCATCTGTTTTCGCCGTCTTAGCAATCGTGGTCATTTTGTTCTTCATCTCAGGTTTTCTTTCTCTCTTCTCTCGTCAATGTGCTGGAGGCCGAACAAGAACCTTAAGCAGGATCAACCTTGCGTTGCACACTGGAGACAGGTCACGCAGCGAGTCACGTGGTCTCAAACAAGAGATCATTGACACGTTCCCCACTTTCCTCTATTCCAATGTGAAGAGCCTCAAGATTGGTAAAGAAACTTTAGCATGTGCTGTGTGCTTGAATGAGTTCCAAGACGATGAAACGCTGCGTTTGATACCTAATTGCAATCATGTTTTCCACCCAAGTTGCATTGATGTTTGGTTATCTTCTCACTCTACCTGCCCAGTTTGCCGTGCCAATTTAGTTCCAAGATCAGAAGATACTCCCCAAACTGTGTCTATTCATATTCCAAACGAGGAAGAAGAAACCATTACCAATGAAGAAAACATAAAAAGAGAAAACAACGATGTTGAATCACCAAAGATGAATTTGTTTCATAGGAGTCAAACAATGAATCAAAGCCGTCCAACACGATCTAGATCAACGAGGTTCTTATTTAATTTATTGTTTCCACGGTCACATTCAACAGATCGTCACTTTGGGGAGAGATTTGAAAGGTACACTCTCAGGTTACCAGATGAGGTTTTGAACTCGACACTGAAGCGTGCTAATAGCTGTGTAAATTTTCGGAGAATGAGTAGTGGGAGGAAGGGTTTTAGAACAAGAAGCTTGGGCAGTGGAAGTGAGAGGAGCTATTTTGAGAGTGAAGAGCAATGGCGGTTCTCAACGATGATGCCGTTTATCACTATGAACAATTGGAATAGATTGTCAAGAAAATCATCTGAACGTTCTTCAGTGATGATGTTGGACGATAATGTTGGGGAAAGATCCTCTGATCTTATGTGTCCCAAGTAG 1149 0.4082 MGDMHANISFMNNNIFQLHLQKQSHVFSVYSFIHSHSFLALFFIIVFIQTSSPATAQFVVGTEVDPNTNNKSSVFAVLAIVVILFFISGFLSLFSRQCAGGRTRTLSRINLALHTGDRSRSESRGLKQEIIDTFPTFLYSNVKSLKIGKETLACAVCLNEFQDDETLRLIPNCNHVFHPSCIDVWLSSHSTCPVCRANLVPRSEDTPQTVSIHIPNEEEETITNEENIKRENNDVESPKMNLFHRSQTMNQSRPTRSRSTRFLFNLLFPRSHSTDRHFGERFERYTLRLPDEVLNSTLKRANSCVNFRRMSSGRKGFRTRSLGSGSERSYFESEEQWRFSTMMPFITMNNWNRLSRKSSERSSVMMLDDNVGERSSDLMCPK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0455 382 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Lal6g0455 382 SUPERFAMILY RING/U-box 148 206 - -
Lal6g0455 382 SMART ring_2 154 195 IPR001841 -
Lal6g0455 382 Pfam Ring finger domain 153 196 IPR001841 -
Lal6g0455 382 PANTHER RING FINGER DOMAIN-CONTAINING 20 323 - -
Lal6g0455 382 CDD RING-H2_EL5_like 154 196 - -
Lal6g0455 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 201 IPR013083 -
Lal6g0455 382 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0455 Lal-Chr6 2898111 2899259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0455 37 316 Rapid Response to Elicitors AT3G05200 36.949 1.32e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0455 K10664 - gmx:100814384 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0455 6 2898111 2899259 Lal6g0455 6 2898111 2899259 ECH
Lal6g0455 6 2898111 2899259 Lal17g0396 17 2659307 2660699 PCT
Lal6g0455 6 2898111 2899259 Lal4g0351 4 2394070 2395017 PCT
Lal17g0396 17 2659307 2660699 Lal6g0455 6 2898111 2899259 PCT
Lal4g0351 4 2394070 2395017 Lal6g0455 6 2898111 2899259 PCT