Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0442 ATGCTTCCTTTTGAGAGATTCTATGGTTTGGAGAGGTGGGTAGATGTTAATCCAGAACCATCTCATTCGTTGATGAAGGGAATGGAAATGAACGATAGGAGATCAAAATCAGAGAGGAAATCAACGGAAGCATGCAAGAGTCACAGAGACGCTGAGAGGAGACGCAGACAGCGAATCAATGACCACCTCACTACCTTACGCTCTCTCCTTCCTAACACCCTCAAGTCTGATAAGGCGTCATTACTGGCAGAAGTGGTTCAACACGTAAAGCGGTTGAGGAAACAGGCTGATGACGTGGCGCATGGAGACTCGTCCTGCAGTGGCAACAGCGAACCCTGTTCTGTTAGTTCTCCGGCGGAGGACGTTGAGCCGTGGCCGTTTCCAGGGGTGTTCGATGAGGCGACGGTGAGCTATTGCGACGGGGAACCAAATCGGATGAAAGTGACATTGTGCTGTGAAGACCGGCCTGGGCTGAACCGGGATCTGATTGAGGCCATTCGGTCGGTTCGGGGAAAGGCGATTCATGCGGAGATGACAACGATTGGGGGCAGAACCAAGAATGTTGTGGTGATTCAATGGGATGAGAAAGAGGAGGAGGCTGGGGCTTTAGAACGGGCTTTGAAAGCAGTGATAGAGAATCGGGCTTTTACGGACCCTTGGATGGGCCGGGTAGTGGTGGGCCAGAAACGGGCTCGGGATTGTTATGATTCGCCTGTGGAGGTTGACTGTGCCTTCTTGTTAGGGGCTAACAATTAA 756 0.5172 MLPFERFYGLERWVDVNPEPSHSLMKGMEMNDRRSKSERKSTEACKSHRDAERRRRQRINDHLTTLRSLLPNTLKSDKASLLAEVVQHVKRLRKQADDVAHGDSSCSGNSEPCSVSSPAEDVEPWPFPGVFDEATVSYCDGEPNRMKVTLCCEDRPGLNRDLIEAIRSVRGKAIHAEMTTIGGRTKNVVVIQWDEKEEEAGALERALKAVIENRAFTDPWMGRVVVGQKRARDCYDSPVEVDCAFLLGANN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0442 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Lal6g0442 251 SUPERFAMILY ACT-like 144 213 IPR045865 -
Lal6g0442 251 Gene3D - 36 102 IPR036638 GO:0046983
Lal6g0442 251 SMART finulus 49 98 IPR011598 GO:0046983
Lal6g0442 251 MobiDBLite consensus disorder prediction 26 56 - -
Lal6g0442 251 Gene3D - 142 217 - -
Lal6g0442 251 Pfam Helix-loop-helix DNA-binding domain 45 92 IPR011598 GO:0046983
Lal6g0442 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 101 IPR036638 GO:0046983
Lal6g0442 251 CDD ACT_UUR-ACR-like 148 211 - -
Lal6g0442 251 MobiDBLite consensus disorder prediction 102 116 - -
Lal6g0442 251 PANTHER OS09G0463900 PROTEIN 17 232 - -
Lal6g0442 251 MobiDBLite consensus disorder prediction 96 121 - -
Lal6g0442 251 MobiDBLite consensus disorder prediction 19 56 - -
Lal6g0442 251 PANTHER TRANSCRIPTION FACTOR BHLH30 17 232 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0442 Lal-Chr6 2789861 2791525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0442 40 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.622 1.53e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0442 HLH 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0442 - - gmx:100816394 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0442 6 2789861 2791525 Lal6g0442 6 2789861 2791525 ECH
Lal18g1182 18 14708818 14709997 Lal6g0442 6 2789861 2791525 LSH