Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0441 ATGGTGAGGCAGAAGATAAAGATAAAGAAAATTGACAACGTAACAGCAAGGCAAGTAACCTTCTCTAAGAGGAGAAGAGGGATCTTCAAGAAAGCTCAAGAGCTTTCTGTGTTGTGTGATGCTAAGGTTGGTCTCTTTGTTTTCTCAGCTACTGGGAAACTCTATGAATACGCCAGTTCAAGTATGAAGGACGTACTTGCAAGGTATAATCAGCATTTTCATGACATCAACCAAAGGGAAAGACCTCTAGACCTGCAGCTAGACAATAGCATTAATCACGCTGAGTTGAGTAAGGAACTGGCAGATAAAACTCAGCTACTAAGGCGAATGAAAGGTGAGGATTTTGAAGGGCTAAACCTAGATGAGCTGCAGCAACTGGAGAAAAGACTTGAAGCAGGACTCAAGCGTGTGATTAAGACAAAGGAAAAGCTGATTACGGATGAGATTGTTGCACTTCAGAAAAAGGGAATCAAGTTAGAAGATGAGAGCAGAAAGTTAAAGCAAAAGATGAATATGATGTACAAGGGAAAAAGTCCACTAATGGTGGACTCGAATATAGCCATTCAGGAAGTTGTTTCATTAGACTCTATGAATAATATCTGCAGCTGCAACAGTTGCCCTTCTCTTGATGATGATTCCTCTGACATATCTCTTAAGTTAGGGTTGCCTTTCCCTGATTGA 681 0.4068 MVRQKIKIKKIDNVTARQVTFSKRRRGIFKKAQELSVLCDAKVGLFVFSATGKLYEYASSSMKDVLARYNQHFHDINQRERPLDLQLDNSINHAELSKELADKTQLLRRMKGEDFEGLNLDELQQLEKRLEAGLKRVIKTKEKLITDEIVALQKKGIKLEDESRKLKQKMNMMYKGKSPLMVDSNIAIQEVVSLDSMNNICSCNSCPSLDDDSSDISLKLGLPFPD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0441 226 Coils Coil 93 113 - -
Lal6g0441 226 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lal6g0441 226 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 220 - -
Lal6g0441 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal6g0441 226 Coils Coil 120 143 - -
Lal6g0441 226 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Lal6g0441 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal6g0441 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Lal6g0441 226 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Lal6g0441 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal6g0441 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal6g0441 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal6g0441 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal6g0441 226 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal6g0441 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal6g0441 226 Coils Coil 149 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0441 Lal-Chr6 2776394 2781865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0441 1 224 MADS-box Gene Family AT2G22540 49.791 2.07e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal6g0441 K-box 8.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0441 - - tcc:18591803 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0441 6 2776394 2781865 Lal6g0441 6 2776394 2781865 ECH