Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0440 ATGGTTGGTGCACCTTCTTTCATGCCATTATTCATCATCACCATCATTCTTATTCACCCCAACATCATTGCAAAGGCCACTGATAATATCAGAGAAACCTCTCCACAAATTCCTAATAAACTCATTCGTGATGATGATAATGGTGGCATTGCCACCTTATCACCCACGGTATCAACACATTATGATCATGATCACCAAAGTAAGAAATCCAAGACATTGAAACCAAGCATAGTGGTTGTGGTGTGTGTTTTAACCAGCCTTTGTTCCATTACCTTTTTGATTCTTCTCTATATCAAACACTGCATTGGTGGTAACACCTCTTCAACTTCCACAAACCAAAATAATAGCTCCGAGGAAAGAAAGAACTCTGGTGTTGAACGTTCCATGGTTGAATCATTACCTATTTTCAGATTCGGTTCACTCAGGGGTCAAAAGGAAGGGTTGGAATGTGCCATTTGTATCAAGAGGTTCGAGGATCACGAGCTTCTTAGACTCCTCCCAAAATGTAACCATGCATTTCATGTTGAATGTGTTGACATGTGGCTTAACGAGCATTCAACTTGTCCTCTTTGTAGGGACAAGGTTGACCTAGAAGATGTTGTTCTCATTGATGAACAACACCTTCCACCACCTTCATTGATACGTCACCAAAGCAATGGCCATAATGAAGGATTTGATATTAACAACACACCGCAATCACGTACACAACCACATAATCTGAACCAAGTAATGTCTAGAAGGCATTCATGGGTTGGGAAGAGTGACAATGGGTTTATAGAAATTAATTTAGAGGATATAGAAGAAACATCATCGAATAGAAGGTCATTGGATGATAGTGTGGTGAGGAGAATAGAGGGTAAGAGAAAAGATGGGAAATTGGTTACACATGAAAACAGGAGATCAAAGAAATGTGAGAAGGATCATAGATTAGAGCACCGTATAATTGTATCTAGTCCTACTACAAAATCATCACAATGTGCCAGTGTCTACCAAAAACGGTGGAGCAATATTGAACCTTGTGATTTGTTGTGTTTAACACCCGACATGATTATTAGTGAAAATTATACGACAACATCATCATCCCAACAACAACAACATCAGAATAGGAGGGTGTCATTGCCGTTCTTACTCAGAAACCAGAATGTTGAAGATGAGATGGAGAAAGGTGATGGGAGGAATATGAATATGAGGACTGTTTCAGAGACAACAGGGATGAATGGGAATAGAGGAAGAGGTAGACGGAGGGAAGAAGAGGAGGAGCATCAAGAGGGAGCAATTAAGAGGTGGTTGGCTTGGATTTCAAAAACACATTCACAGTAA 1320 0.4 MVGAPSFMPLFIITIILIHPNIIAKATDNIRETSPQIPNKLIRDDDNGGIATLSPTVSTHYDHDHQSKKSKTLKPSIVVVVCVLTSLCSITFLILLYIKHCIGGNTSSTSTNQNNSSEERKNSGVERSMVESLPIFRFGSLRGQKEGLECAICIKRFEDHELLRLLPKCNHAFHVECVDMWLNEHSTCPLCRDKVDLEDVVLIDEQHLPPPSLIRHQSNGHNEGFDINNTPQSRTQPHNLNQVMSRRHSWVGKSDNGFIEINLEDIEETSSNRRSLDDSVVRRIEGKRKDGKLVTHENRRSKKCEKDHRLEHRIIVSSPTTKSSQCASVYQKRWSNIEPCDLLCLTPDMIISENYTTTSSSQQQQHQNRRVSLPFLLRNQNVEDEMEKGDGRNMNMRTVSETTGMNGNRGRGRRREEEEEHQEGAIKRWLAWISKTHSQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0440 439 CDD RING-H2_EL5_like 149 192 - -
Lal6g0440 439 MobiDBLite consensus disorder prediction 408 424 - -
Lal6g0440 439 MobiDBLite consensus disorder prediction 212 236 - -
Lal6g0440 439 PANTHER RING-H2 FINGER PROTEIN ATL43 52 438 - -
Lal6g0440 439 SMART ring_2 150 191 IPR001841 -
Lal6g0440 439 Pfam Ring finger domain 149 192 IPR001841 -
Lal6g0440 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 52 438 - -
Lal6g0440 439 MobiDBLite consensus disorder prediction 387 424 - -
Lal6g0440 439 SUPERFAMILY RING/U-box 144 197 - -
Lal6g0440 439 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Lal6g0440 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 200 IPR013083 -
Lal6g0440 439 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0440 Lal-Chr6 2774140 2775459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0440 70 432 C3H Transcription Factor Family AT5G05810 36.962 1.02e-57 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0440 K19041 - lang:109360354 724.546