Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0439 ATGGAACCACCAATTTACACTCACGCCCACCCAATGAACATGTCCAATCACATCGCCGCCGCCGAGAATGACGACGCTTCCGGTCAGCCTTCTATCGACCACATTCAATACGAAACGCATGACCTTGAAGATGGTAATGGCGGAATTGACGGTTGTGTAATCGAAGATGTTAATTCTGACGGTATCTATGTTTCCGGCGACGGTGGTGGTGGCGACCACGACTTTTCTCTTCAACCCTGCGATGGGTCTAGCCAGCTAACGCTGGCGTTTCGTGGCCAAGTTTATGTTTTCGATTCTGTTACACCGGATAAGGTTCAATCGGTATTGTTATTTTTGGGTGGACGTGAATCACCATGCCCAGATACAGCACCTCAACATGATTCAAGGGTATTTTCTGATAATAGAAGAACAATGGTCCTGCAGCAGGGTCCAATGGAATATCCTGCAAGATGTAGTCAACTGCAGCGGGCAGCCTCGTTAAGCAGGTTTCGTCAGAAGAAGAATAAGCGGTGCTTTGATAAGATAGTTAGATATGATGTACGTCAAGAAGTTGCACTCAGGATGCACCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGTTAATAGTTGGGGTACAGACCAGGAGTTAGGGCAGGATGATAGTCCATCCGAAACTGTATGCACACATTGTGGCATTAGTTCAAAATCTACCCCAATGATGCGGCGAGGGCCAAATGGTCCAAGATCACTATGCAACGCTTGTGGACTTTTTTGGGCAAGTAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCAGGAACTCTCTCTTGTACCAGCTGAAAAGGTAAATTACTCAGACTGTGGGACTGCCATCCGTGCACATAACAATCTTGTTGCTTTCTCTGTCAAAGATAACCCGGATTTGGTATCAGATCGTTGA 930 0.4602 MEPPIYTHAHPMNMSNHIAAAENDDASGQPSIDHIQYETHDLEDGNGGIDGCVIEDVNSDGIYVSGDGGGGDHDFSLQPCDGSSQLTLAFRGQVYVFDSVTPDKVQSVLLFLGGRESPCPDTAPQHDSRVFSDNRRTMVLQQGPMEYPARCSQLQRAASLSRFRQKKNKRCFDKIVRYDVRQEVALRMHRNKGQFTSSKKQDGVNSWGTDQELGQDDSPSETVCTHCGISSKSTPMMRRGPNGPRSLCNACGLFWASRGALRDLSKRNQELSLVPAEKVNYSDCGTAIRAHNNLVAFSVKDNPDLVSDR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0439 309 Gene3D - 214 273 IPR013088 GO:0006355|GO:0008270
Lal6g0439 309 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Lal6g0439 309 PANTHER GATA TRANSCRIPTION FACTOR 28 23 282 IPR045280 GO:0006355
Lal6g0439 309 SMART GATA_3 218 271 IPR000679 GO:0006355|GO:0043565
Lal6g0439 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 270 - -
Lal6g0439 309 MobiDBLite consensus disorder prediction 197 217 - -
Lal6g0439 309 CDD ZnF_GATA 223 269 IPR000679 GO:0006355|GO:0043565
Lal6g0439 309 MobiDBLite consensus disorder prediction 194 217 - -
Lal6g0439 309 Pfam tify domain 82 113 IPR010399 -
Lal6g0439 309 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Lal6g0439 309 SMART tify_2 79 114 IPR010399 -
Lal6g0439 309 ProSitePatterns GATA-type zinc finger domain. 224 251 IPR000679 GO:0006355|GO:0043565
Lal6g0439 309 ProSiteProfiles GATA-type zinc finger domain profile. 218 278 IPR000679 GO:0006355|GO:0043565
Lal6g0439 309 PANTHER GATA TRANSCRIPTION FACTOR 25 23 282 - -
Lal6g0439 309 Pfam CCT motif 156 198 IPR010402 GO:0005515
Lal6g0439 309 Pfam GATA zinc finger 224 259 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0439 Lal-Chr6 2769645 2773187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0439 19 307 Tify Gene Family AT4G24470 48.986 2.79e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal6g0439 CCT 2.8e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0439 - - lang:109356321 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0439 6 2769645 2773187 Lal6g0439 6 2769645 2773187 ECH
Lal22g0400 22 2608366 2614831 Lal6g0439 6 2769645 2773187 LSH