Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0425 ATGGACTCGCACTACCTAATATCAGGCCCAATGGACAGTGTTGAGGCCTGTTTCCCATTGAGCCTCTTAACCTTCGATGGTGGTTTGGGCCCAAATTATAAGCCCAATATCCTTAGCAAATACGCAGCCATGGGGAGGAGTAAGCGTCTACCCATTTTCCTCAAGTTTAGATTTTTCTTTCAATCACATATCTGCTATCGAAATTCGTTTTCTTCTGGATCTGAATATGCCAATGTCTCGGTTTTGTCGCGGTGTTCTGATCCCAAGATTAGAATTTATGATGTCCACATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATTTTGTATGTTGGGAGAAGGATAATGTTTCAAGTGAGGCATTTGAGGCTGCTAGGATTGCATGCAACAAATATATGTCTAAGTTTGCTGGAAAGGATTCATTCCATTTGAGGATCAGGGGGACACATGCTAGATTGGTTATCGGGCAGGTCCTTCTCTCTGTCCGCCACAAGGACAGAAACGGCCATCATGCACAGGAGGCACTGTGCCGTACTAAATTCAAACAATCATTGGTATTAACCAAGTATAGCCATGCTGATTATCTAAAGTACAAGTCAGAAAACAGAATTGTGCCTGATGGTGTGAATGCCAAGCTTCTCCGGTGCCGTCAACCAGGAAGAGCTTTCTTGGAACCAGGAAGAGCTCTCATTCTAAAATAA 708 0.4336 MDSHYLISGPMDSVEACFPLSLLTFDGGLGPNYKPNILSKYAAMGRSKRLPIFLKFRFFFQSHICYRNSFSSGSEYANVSVLSRCSDPKIRIYDVHMKKKGVDEFPFCVHFVCWEKDNVSSEAFEAARIACNKYMSKFAGKDSFHLRIRGTHARLVIGQVLLSVRHKDRNGHHAQEALCRTKFKQSLVLTKYSHADYLKYKSENRIVPDGVNAKLLRCRQPGRAFLEPGRALILK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0425 235 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 74 149 - -
Lal6g0425 235 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 149 232 - -
Lal6g0425 235 CDD Ribosomal_L16_L10e 100 184 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lal6g0425 235 Gene3D - 195 224 - -
Lal6g0425 235 Gene3D Ribosomal protein L10e/L16 62 149 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lal6g0425 235 Gene3D Ribosomal protein L10e/L16 150 194 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lal6g0425 235 SUPERFAMILY Ribosomal protein L16p/L10e 80 184 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lal6g0425 235 PANTHER 60S RIBOSOMAL PROTEIN L10 149 232 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lal6g0425 235 PANTHER 60S RIBOSOMAL PROTEIN L10 74 149 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0425 Lal-Chr6 2695607 2698237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0425 65 226 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 51.185 3.13e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0425 K02866 - cit:102626628 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0425 6 2695607 2698237 Lal21g0611 21 4613831 4616559 PCT
Lal6g0425 6 2695607 2698237 Lal4g0563 4 4085591 4088191 PCT
Lal21g0611 21 4613831 4616559 Lal6g0425 6 2695607 2698237 PCT
Lal4g0563 4 4085591 4088191 Lal6g0425 6 2695607 2698237 PCT