Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0424 ATGGAAACTTTGGATAATAATTTAAACCAATATGCTACCATTTCTTCTAATTCATCATCAACATCATCTTCTGGAGGTTTGAATAGTAATAATAACAATGCTAACAGTAATAGCAGTGCTGCCACAGTAACATGGTATGGTATGAATTTTCCCTCTGTGAGAACCTTGCGTTCTCCACTATCCTATTTGTTGGAGCGTTCTGGAATCCTAACCTCAGGCCCTGAACCAGAGGCAGTGATTGCCAATAATGGAGTTACCGGTTCGGAGTTACGGTCTCAGCTTCAAACTCAGTCACTTAATGGTGGGGGTGGGGGTGGTGGTGGTGCTGACATTGGAACACTCTGCACCAATAGTACTGGTGAAGTTGCAATAAGGATCATTGGAGCTGGAGAGAATGATCACAATGTTGTAGGGTCTGGTTCTCTTTCTTTGCCGTCTTGGAATCCCCGTGGAGAGGTTGGTTATGGTGACCCGGTGAGTGATAGAGATGGAAGGCCTGGATTGGTTGATGATGGTGATGGTAATGATCATGGTGAAATTGTGAATGGTGAGAGGGTTCATCGTGTGTCTTCGTCTTCGTCATTGGCTGGTAATGGACAAGTTGGTGGGGATGCTGCTGGGAATGGCTTAGAAAGTAATGGTAGGGAGTCCTCATCCTACCAGAGGTTTGATATTCAGCAGATTGCGAAGTGGATTGAACAGATTCTGCCTTTTTCCCTCTTGTTATTCGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAAAGGCAGACAGCGTTAAAGGGAGATAGGAGAGTATCTATCCTGGTTGGCATCTCAACTGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATGCCCACTGGTCATGATTCCTCCAAAAGCAACACCATTCTGGCATTCAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCTGCAATGGCTTTCAAGTGTTTTCTGCTTATATATTACAAAAATGGCAGAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTGACTCTGGTAGAGTACACGCTGCTGTTGTATCGTGCCTTGTTGCCAACTCCAGTTTGGTACCGTTTTTTCCTGAACAAGGATTATGGCAGTCTCTTTTCGTCACTGACCACTGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTTAAATGTTTTTTTTCTGCCGTGAAAGCGTTATCAAGAAAGGATGTTAACTATGGGGTTTGTGCCACAATGGAACAGGTTAATGCTTCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATGCCCCCATCTTGTTGCACTGTAAACACATTTTCTGCGAAGAGTGTGTATCAGAATGGTTTGAGAGAGAAAGGACTTGCCCACTTTGTAGAGCAATGGTAAGACCTGCTGATCTGAAAACCTTTGGAGATGGATCTACAAGTCTACTATTTCAGTTGTTTTAA 1542 0.4287 METLDNNLNQYATISSNSSSTSSSGGLNSNNNNANSNSSAATVTWYGMNFPSVRTLRSPLSYLLERSGILTSGPEPEAVIANNGVTGSELRSQLQTQSLNGGGGGGGGADIGTLCTNSTGEVAIRIIGAGENDHNVVGSGSLSLPSWNPRGEVGYGDPVSDRDGRPGLVDDGDGNDHGEIVNGERVHRVSSSSSLAGNGQVGGDAAGNGLESNGRESSSYQRFDIQQIAKWIEQILPFSLLLFVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRRVSILVGISTAFMLHVMCIYWWYRNDDLLCPLVMIPPKATPFWHSIFIILVNDTLVRQAAMAFKCFLLIYYKNGRGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVKCFFSAVKALSRKDVNYGVCATMEQVNASGDLCAICQEKMHAPILLHCKHIFCEECVSEWFERERTCPLCRAMVRPADLKTFGDGSTSLLFQLF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0424 513 SMART ring_2 452 489 IPR001841 -
Lal6g0424 513 ProSitePatterns Zinc finger RING-type signature. 467 476 IPR017907 -
Lal6g0424 513 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 17 513 IPR044235 GO:0061630|GO:1904294
Lal6g0424 513 MobiDBLite consensus disorder prediction 147 180 - -
Lal6g0424 513 MobiDBLite consensus disorder prediction 156 180 - -
Lal6g0424 513 ProSiteProfiles Zinc finger RING-type profile. 452 490 IPR001841 -
Lal6g0424 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 500 IPR013083 -
Lal6g0424 513 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 513 - -
Lal6g0424 513 MobiDBLite consensus disorder prediction 14 35 - -
Lal6g0424 513 Pfam Zinc finger, C3HC4 type (RING finger) 450 493 - -
Lal6g0424 513 MobiDBLite consensus disorder prediction 192 213 - -
Lal6g0424 513 CDD RING-HC_RNFT1_like 451 490 - -
Lal6g0424 513 SUPERFAMILY RING/U-box 441 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0424 Lal-Chr6 2688193 2693785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0424 56 513 C3H Transcription Factor Family AT5G01960 58.568 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0424 - K22379 nnu:104612968 586.26