Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0410 ATGGATTTCTTATACTATTTCTTCTGCATATTTTGGATAATCAATCTTCTACCTTCCATAAATCCATACCAAGTTGCAGTTTGTTCAGCTAGTGATTTTCCAAATCCAATAAATGTAACAAAGCACTTTTCCTTCCCTGATTTCAGCTTCACCAATAACCCAAGACTTGTACATGATGTGAAGCTCCTAGGCAGTGCCAAGTTCTCAAATGAAAAGGGTACTCTTCAAATTCCAAATGAATCACAAGACACTGATATAAGACACCAAGCAGGTAGAGGAATCTATTCCTTCCCAATCCGTTTACTAGATCCAAGTACAAAGACTCCAGCTTCTTTTGAAACAACTTTTTCTTTCCAGTTCAACAATTCCACTATAAATCAAACTGATTATGGTGGTGGTAGTGGCCTAACTTTCATCATTGTCCCTGATGAATTCACTGTGGGAAGGTCAGGGCCTTGGCTTGGAATGCTAAATGATGCTTGTGAGATTGATTACAAGGCAGTGGCAATAGAGTTCGACACTCGAATGAACCCGGAATTCGGAGATCCAAATGACAACCATGTTGGCATCAATTTAGGTACCATTGTATCTACTAAAACTATCAATGTTTCTGGTGTTGGAGTGTCCCTTAAGGATGGTTTTGTTCACCATGCATGGATTACCTATGATGGTCCTAATAAAAGATTGGACATTCGTTTAGGACTACCAAATCAGGAAGTTTATCCTTCTAAGCCTATCTTTTCAGAATCAGTAGATCTCTTTCCATATCTCAATGAGTACATGTTTGTAGGATTCTCAGCTTCCACAGGTAATCATACTCAAATCCACAACATACTCTCTTGGAACTTCACTTCCACCAGCCAAGCTTTTCTTCGCTTCCCTTCGTCCGAAACTTGCCAGGGTAAGATCTTACTTCAGAATAGCAAAACAGAAGAAGAACCTGCCAAAAAGTCTAGTAAGGATAAAACTCCATACAGTTTTTTTATTTTTGTGGCTGTGGTGGCATTTGTTCTGGCTGTTCTCATTGGTTTTTACTTCATCAATAACTATAGAAGAAATGCAGCCAAATCAAAGAATTCAATGGACGTAGAAATTCTCCGGCCGAGACCACCAAACAAACCACGCCGATTCTCATTCTCCGAATTTTCCTCAGCAACTAGGTCATTCAGTGAGATAGAGTTGCTTGGTGGTGATTCTAGAGGAGAGTACTATAGGGGAAAGCTTTCTAATGGAAGCAATGTAGCAGTGAAAAGATTCTCAGCTCAGTTTCTCAACACACATGGATCAGATAGGAAACGTTTGTTGAAGGAAATCAAAACCATTTGCCATGCTCGCCACCCGAATTTGCTTCCTGTCAGAGGCTGGTGCGAAGATAAAAATGAAGTCATGGTGGCCTATGAATTTGTCCACAACGGCAGCCTAGATAAATGGCTATTTGGTGCTGGTGTTCTTCCATGGACGCGACGATTCAAGGTTATCAAAGATGTAGCTGATGGACTGAACTTCCTTCACACAAAGCAACTAGCCCACAAGAACTTGAAATGTAGCAGTGTGTTTCTAGATGTTAGTTTCAGAGGTGTTTTGGGTGATTTTGGGTTTGTGCTATTAGGTGCAGAATCAAAACAGTTTGAGTTATTAGTGTGTCATGGTGCTGATGTGTTTGAATTTGGTGTCCTTGTTTTAGAAGTAATAGCTGGAAGGAAAAGGGTGGAAGGGGAGATAGAGGAGTTAAAAGCAGAAGAGAAGAACTTGTTGGATTTTGCTTGGAACTTGCATGAGACTAATGAGAAAGTGAAGTTGGTGGATAGAAGGATGGGATCATTGGTCAACTTGGAGCAAGCAAATCGTGTTCTTGAAATTGGATTGCTTTGCACTTTGAATGAGAACAAAGGGAGGCCTTCTATGGAGGAAGTGGTGGGGTTACTTCTTAACATGGATAAGCCTATTCCTAAGCTTCCACCAACTCGCCCCGTTGCTTTGTTCCCCTATAATAGTGCCAACACTGGACTCTGCAATACATACTCCTGTACTTTTAAGTGA 2040 0.4069 MDFLYYFFCIFWIINLLPSINPYQVAVCSASDFPNPINVTKHFSFPDFSFTNNPRLVHDVKLLGSAKFSNEKGTLQIPNESQDTDIRHQAGRGIYSFPIRLLDPSTKTPASFETTFSFQFNNSTINQTDYGGGSGLTFIIVPDEFTVGRSGPWLGMLNDACEIDYKAVAIEFDTRMNPEFGDPNDNHVGINLGTIVSTKTINVSGVGVSLKDGFVHHAWITYDGPNKRLDIRLGLPNQEVYPSKPIFSESVDLFPYLNEYMFVGFSASTGNHTQIHNILSWNFTSTSQAFLRFPSSETCQGKILLQNSKTEEEPAKKSSKDKTPYSFFIFVAVVAFVLAVLIGFYFINNYRRNAAKSKNSMDVEILRPRPPNKPRRFSFSEFSSATRSFSEIELLGGDSRGEYYRGKLSNGSNVAVKRFSAQFLNTHGSDRKRLLKEIKTICHARHPNLLPVRGWCEDKNEVMVAYEFVHNGSLDKWLFGAGVLPWTRRFKVIKDVADGLNFLHTKQLAHKNLKCSSVFLDVSFRGVLGDFGFVLLGAESKQFELLVCHGADVFEFGVLVLEVIAGRKRVEGEIEELKAEEKNLLDFAWNLHETNEKVKLVDRRMGSLVNLEQANRVLEIGLLCTLNENKGRPSMEEVVGLLLNMDKPIPKLPPTRPVALFPYNSANTGLCNTYSCTFK 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0410 679 Gene3D Transferase(Phosphotransferase) domain 1 469 649 - -
Lal6g0410 679 CDD lectin_legume_LecRK_Arcelin_ConA 42 286 IPR001220 GO:0030246
Lal6g0410 679 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2-LIKE 39 660 - -
Lal6g0410 679 Gene3D - 40 286 - -
Lal6g0410 679 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 287 IPR013320 -
Lal6g0410 679 ProSiteProfiles Protein kinase domain profile. 389 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0410 679 PANTHER - 39 660 - -
Lal6g0410 679 Pfam Protein tyrosine and serine/threonine kinase 393 534 IPR001245 GO:0004672|GO:0006468
Lal6g0410 679 SUPERFAMILY Protein kinase-like (PK-like) 370 642 IPR011009 -
Lal6g0410 679 Pfam Legume lectin domain 42 288 IPR001220 GO:0030246
Lal6g0410 679 Coils Coil 567 587 - -
Lal6g0410 679 Gene3D Phosphorylase Kinase; domain 1 347 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0410 Lal-Chr6 2575129 2577168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0410 29 655 Receptor kinase-like Gene Family AT5G55830 30.735 5.47e-90 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lal6g0410 Lectin_legB 3.8e-56 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0410 - - lja:Lj2g3v2196570.1 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1211 18 14940235 14942211 Lal6g0410 6 2575129 2577168 LSH
Lal22g0045 22 267962 269989 Lal6g0410 6 2575129 2577168 LSH