Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0408 ATGACTCCGTTAACTGGATTCAATGGTGCTTATTTAACATTGACCCTTGACATTAAAAAAGTAATATACTTTTCTAGTGCCATAACAAGACCTAGTTTTTTTTTGTTTTCTCAAATAGCAATGCCTGTCCTAACATTTGGTCATTCTAAGTTGAGTGCTGCTACCTTACCATGTAACTGTGTGAGAAGGGTAGGGTTGATTACTAGGCTTCAGTATTCTGTTGCTGATAGAACATCACTCACTTCTGGTTCTGCATCAGAACTGGATTCCGGTCGAGTGAGTAGGAAGCGGGGAGGGTCCTCCTCGTTGGTATATACTCTTCCTGGTTTAGAAGAAAGGAAGAAAGATAAGGAGGTGATGCGCAAAAAGGTTTATAAGTTCTTGCAGGGTATTGGCATTGTTCCTGATGAACTTGATGGTCTTGATCTTCCTGTGACAGTTGATGTTATGAGGGAGCGCATTGATTTTCTTCACAATTTGGGGCTTACAATTGAAGACATCAATAACTATCCACTTGTTCTCGGCTGCAGTGTGAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTCAGGAAATCCACATTCACTCAATTCTTGCAGAGATACCCTCAAGTACTCCATGCTAGTGTGGTTGTGGATCTTGATCCTGTCGTGAAGTATCTTCGAGGGATGGATATAAAGTCTGAAGATATTCCTCGTGTTCTTGAGAGCTACCCTGAAGTGTTAGGTTTCAAACTTGAAGGAACCATGAGTACGTCTGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGAGAAATTGGAGGGGTCTTAACAAGATACCCGGAGATTTTAGGGATGCGAGTTGGTAGAGTCATCAAGCCTTTTGTAGACTTCATGGAAAACTTGGGAATTCCAAAATTAGCTATTGCTCGGTTGATAGAGAAGAAACCTTATATACTTGGATTTGGATTGGATGAGAAGGTGAAGCCAAATGTGAAATCCCTTGAAGAGTTTAACGTACGGAGAACATCACTTGCCTCTATAATCGCTCAATATCCTGACATCGTTGGAACTGACTTAAAGCTAAAGCTTGACAATCAGAGAAGTTTACTCAATTCTGTACTCAATTTGGATCCTGAGGATTTTGGAAGAGTTGTTGAGAAGATGCCACAAGTTATTAGTCTCAGTAGAGGACCTGTGCTGAAGCATATTGATTTTCTCAAGGATTGTGGGTTTTCTATGCAACAAATGAGGAAGATGATTCTTGGATGCCCTCAACTACTTGCGTTAAACATTGACATCATGAAACCCAGCTTTGATTACTTCCAAATGAAGATGAAATGGCCTTTGGAAGACTTGGTTACTTTCCCAGCATTTTTTACTTATGGTCTGGAGTCAACTGTAAAACCTAGGCATAAGATGGTTACCAAGAAAGGATTGAAGTGTTCTCTTGCATGGATGCTTAATTGCTCTGACGAGAAATTTGAGCAACGAATGGACTATGATACAATTGACATGGAAGAGATGGAAAAGGAACCATCATTTGACATGAATTCGCTGATGCAACCAAGGGCTGGTGAATCAGATTCTGATTATGAAGACAGTGATGATGATATCGATTAG 1617 0.402 MTPLTGFNGAYLTLTLDIKKVIYFSSAITRPSFFLFSQIAMPVLTFGHSKLSAATLPCNCVRRVGLITRLQYSVADRTSLTSGSASELDSGRVSRKRGGSSSLVYTLPGLEERKKDKEVMRKKVYKFLQGIGIVPDELDGLDLPVTVDVMRERIDFLHNLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTQFLQRYPQVLHASVVVDLDPVVKYLRGMDIKSEDIPRVLESYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGVLTRYPEILGMRVGRVIKPFVDFMENLGIPKLAIARLIEKKPYILGFGLDEKVKPNVKSLEEFNVRRTSLASIIAQYPDIVGTDLKLKLDNQRSLLNSVLNLDPEDFGRVVEKMPQVISLSRGPVLKHIDFLKDCGFSMQQMRKMILGCPQLLALNIDIMKPSFDYFQMKMKWPLEDLVTFPAFFTYGLESTVKPRHKMVTKKGLKCSLAWMLNCSDEKFEQRMDYDTIDMEEMEKEPSFDMNSLMQPRAGESDSDYEDSDDDID 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0408 538 Pfam mTERF 186 494 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC 66 524 - -
Lal6g0408 538 SMART mt_12 200 231 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 416 447 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 381 411 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 308 339 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 236 267 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 344 376 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 164 195 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 SMART mt_12 448 479 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 MobiDBLite consensus disorder prediction 509 538 - -
Lal6g0408 538 PANTHER CGI-12 PROTEIN-RELATED 66 524 IPR003690 GO:0003690|GO:0006355
Lal6g0408 538 Gene3D Transcription termination factor 3, mitochondrial 117 216 IPR038538 -
Lal6g0408 538 Gene3D Transcription termination factor 3, mitochondrial 288 502 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0408 Lal-Chr6 2558947 2561038 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal6g0408 mTERF 1.8e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0408 K15032 - gmx:100785223 794.267