Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0407 ATGGGTGAAGATGTTGTTGGGTTTTGTCTGAAAGCGCGTGGGGGGGACGCGCCAGCCTTGTCTTTGAACTCACTGCCATTAGGGTTTCGATTTAGACCAACGGATGAGGAGCTTATTGATTATTATTTGCGTCAGAAGATCAATGGAAATGGTGATGATGTTTGGGTCATTCGTGAAATTGATGTCTGTAAATGGGAGCCTTGGGATTTGCCAGATTTGTCAGTGGTGCGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACCGCAAGTATCCAAACGGTCATCGTTTGAACCGAGCAACAACTCATGGATATTGGAAGGCAACGGGCAAGGATCGCAAAATTAAGTCTGGCTCCACCTTGATTGGAATGAAGAAGACTCTAGTTTTCTATACTGGCCGTGCTCCTAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGACCCACCCTAAAGGAGCTTGATGGTACCAATCCTGGACAGAACCCATATGTCATTTGCCGATTATTTAAGAAACAAGATGAGAGTCTTGAAGTTTCTAATTGTGATGAAGTGGAGCACACTGCTTCAACTCCTACGACTGCCAATCACACTCCAGAAGAAATACACTCTGATCCATCTCTGGTTCCAGTATCTTCATCACAGGTTACCGAAGATGATAAGCAGCTAGCAGTTATTGCTGAGAACTCTGAGGAAGCAATATCCGACATTATAAACTCAGTCAATGTCCATGGCGACAGATGTGATGTTTATGGTGCACAGAATCAAGTTGCAGAACCATCTGCAGAGGCAGTTCAGCCATTCAACTGGGACTTACTTAATCCGCCACTTCAGCAATTGGATGACAAATTATTTTCCCCAGATCGTGTGCATATTCTGCCAGAATTTTATTATCATGCAAACAATGAATCAGATGGCAGCTGTGGGCTGCAACATCAGTATGGTACAAATGAGACAAATATTACAGATTATTTTAACTCATTTATTGATGCCTACTGCTACAATGAGTCAATAAGCCAAAAGATGAACCCCACATTGTTTAATGTCCAAGACAGTGGATTGTTCATTAAATCAGATGTGCAAATAGCCAATACAACGCATATACAAGCATTTCATGCTGCTTATCCTGAGGAGGCAATTGATAAAACGACTCCTTTGTTACCGAGCACGGGCAACGAATTTTGCAGCACCATTGCCTCTGACCTTAGTGGCAATGACCATAAAAGTAATGTAGGATTGTTGCAAAATGATTCCTTAATGTTTTCCTCAAATAATGTTGGTATGGGCGAAGTGTACAGTGGGGTCAATGGTTATGAGCAAGCTCGAAACTTTGATACGGTTGTTAATGGGGATACTGGAATCAGCATCAGGACTCGGCAAGTACGAAATGAACAGCCAAACATCAACACCATGGTGCAATTGCAAGGTATTGCTAACAGGAGAATACTATTGGGAGGATTTGTTATGCATCCGCATGGTTGTTCTGATGAAGCAGCAAAAGATGGGAGTTATTCACCAGAAGACCACAGTTCAAAATCAACCATTGTCGGGAAGAGTGGAACTTCAGAAAATCATGCTTTTGGTGAGAGCACCACTGTTACTGATGATGATGAACTAAAGGCAATTGTTAAGCTTCTTGGCAGGTGTAGGATGTTTCAATTTAAGCAACAAGTTTCTTCTGCAGAGTCCATGGGAGTAGAAGACTTGACATTGAAAAGAATGGTCTTTGACGCATCAAAGACTTCCTCCAATCGTGCCATGTGGTCTTTTGTTTTTGCAGTTTCAGCCATTGCACTTGTCCTACTAGTATTCCTTGCTAATATATGGGGATATCTTCAATTTTAA 1854 0.4234 MGEDVVGFCLKARGGDAPALSLNSLPLGFRFRPTDEELIDYYLRQKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVICRLFKKQDESLEVSNCDEVEHTASTPTTANHTPEEIHSDPSLVPVSSSQVTEDDKQLAVIAENSEEAISDIINSVNVHGDRCDVYGAQNQVAEPSAEAVQPFNWDLLNPPLQQLDDKLFSPDRVHILPEFYYHANNESDGSCGLQHQYGTNETNITDYFNSFIDAYCYNESISQKMNPTLFNVQDSGLFIKSDVQIANTTHIQAFHAAYPEEAIDKTTPLLPSTGNEFCSTIASDLSGNDHKSNVGLLQNDSLMFSSNNVGMGEVYSGVNGYEQARNFDTVVNGDTGISIRTRQVRNEQPNINTMVQLQGIANRRILLGGFVMHPHGCSDEAAKDGSYSPEDHSSKSTIVGKSGTSENHAFGESTTVTDDDELKAIVKLLGRCRMFQFKQQVSSAESMGVEDLTLKRMVFDASKTSSNRAMWSFVFAVSAIALVLLVFLANIWGYLQF 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0407 617 MobiDBLite consensus disorder prediction 189 215 - -
Lal6g0407 617 Gene3D NAC domain 34 179 IPR036093 GO:0003677|GO:0006355
Lal6g0407 617 ProSiteProfiles NAC domain profile. 25 175 IPR003441 GO:0003677|GO:0006355
Lal6g0407 617 Pfam No apical meristem (NAM) protein 26 151 IPR003441 GO:0003677|GO:0006355
Lal6g0407 617 MobiDBLite consensus disorder prediction 500 532 - -
Lal6g0407 617 SUPERFAMILY NAC domain 20 175 IPR036093 GO:0003677|GO:0006355
Lal6g0407 617 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 20 472 - -
Lal6g0407 617 MobiDBLite consensus disorder prediction 511 532 - -
Lal6g0407 617 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 20 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0407 Lal-Chr6 2552927 2556731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0407 19 487 NAC Transcription Factor Family AT4G35580 42.797 3.83e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal6g0407 NAM 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0407 - - lang:109356058 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0383 22 2435983 2439794 Lal6g0407 6 2552927 2556731 LSH
Lal6g0407 6 2552927 2556731 Lal21g0603 21 4537727 4544491 PCT
Lal21g0603 21 4537727 4544491 Lal6g0407 6 2552927 2556731 PCT