Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0401 ATGGGTCTTCCAAATCTTCCATCTTCATCTGAAGGAATATTTTGTTGTTTTTTGGGAAATGGTGTGTTTCCAATATCCATTTTTAAAGGCATTCTTAAGATAATTTTACACATCGTTGGTATCAATTTTTCATCATCATCATCACAAACTTCATCCCCTACAACAGATACCTCTCAATACCCACCTGAGTCATTTGAACTTCTTGTTAATCACTGTAATAGTACTTACATAGAAGAGATTCGAAGCCAGATACCAACAATTAGGTTTGACAGTGTGTGTTGTCATAAACAAGCTGAAGTTGAATGCATTGTATGCCTTACTCAGTTTGAACCAGAATCAGAGATAAACCATTTATCTTGTGGTCATATCTTCCACAAAGTGTGCTTGGAGAAGTGGTTGTACTATTGGAACAGTACATGCCCACTTTGCAGGGCTCCCTTAATGCTTGAAGTTGAAGATGAGACACCTTGCTTTTAG 477 0.3711 MGLPNLPSSSEGIFCCFLGNGVFPISIFKGILKIILHIVGINFSSSSSQTSSPTTDTSQYPPESFELLVNHCNSTYIEEIRSQIPTIRFDSVCCHKQAEVECIVCLTQFEPESEINHLSCGHIFHKVCLEKWLYYWNSTCPLCRAPLMLEVEDETPCF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0401 158 Pfam Ring finger domain 101 144 IPR001841 -
Lal6g0401 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 153 IPR013083 -
Lal6g0401 158 SMART ring_2 102 143 IPR001841 -
Lal6g0401 158 PANTHER - 1 157 IPR044249 -
Lal6g0401 158 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Lal6g0401 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 157 - -
Lal6g0401 158 SUPERFAMILY RING/U-box 96 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0401 Lal-Chr6 2519206 2519682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0401 1 153 C3H Transcription Factor Family AT2G04240 52.258 1.40e-42 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0377 22 2406784 2409287 Lal6g0401 6 2519206 2519682 LSH