Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0400 ATGGGTTACTTATGTGATTTTTGTGGAGATCAAAGGCCCCTGGTATACTGCCGCTCTGATGCCGCATGCTTATGTTTGTCATGTGATAGAAATGTCCATTCGGCTAATGCCCTTTCGAGGCGTCACTCGAGGACCCTTGTATGTGAGAGATGTAATTCACAACCTGCCTTTGTTCGGTGTACCGAAGAGAACATTTCACTTTGTCAAAACTGTGATTGGTTGGGTCATGGTACCATGCCATCTTCTTCAGCACATAACAGGCAAACAATCAATTGTTACACTGGCTGCCCTTCGTTGGCAGAACTTTCTTCATTGTGGTCCTTTTTCTCTGTTATTCCCTCGATAGGTGAAACATGTGAGCAGGAACTAGGTTTAATGGGCATTAATGAGAACAGCGATAGCAGTACTTGGGTTACTTCAGAAAGCCAGAATGTGTCAGGTTCAGCTCAAGTGACTGATCTACCCAGTCAGAATAAATCTTGGGTTGGTACATCTTCAATGCCGGAGTCAAGTTCAAAACCTCGTCTTCTGGACCACCCGCCAGAATCTGCTGATGAATGTATTCCAAAGTTAAATTTGCCCCATAAAAATTCTCCTGGAATATTTGAAGATAATGATCTGTATGACGATTTCAATATGGACGAAGTAGATCTAGATCTTGAGAAGTACGAGGAACTTTTTGGTATGACCCTTAGTCATTCTGAAGACCTATTTGAAAATGGTGGGATTGATAGCTTATTTGGGGCAAAGGAAATGTCAGCTAGTGCTGGTGATTCCAATTGTCAGGGTGCTTTTGCAGCTGAGGGATCATCGGTTGGGTTGGTCAATGCGGTGCAACCAGCATGCAGCAATGCTGCATCTGCAGATTCAATGTTGAGTTCTAGAACTGAACCGATTCTTTGTATTACGGGAAGGCAATCCCAATCAAACATTTCATTTTCTGGCAAATCCAAAGATAGTAGTGCTGCTGACTTTCAAGACTGTGGGGCTTCTTCAATGCTCCTGATGGGAGAGCCTCCCTGGAGTGCTCCTTGCACTGAGAGTTCTGTGAAATCTGCTAGCCGTAGCGATGCTGTCTTGCGTTATCGGGAAAAGAGAAAGGCACGAAAGTTTGAGAAAAGAGTAAGGTATGTCTCTCGCAAGGCTCGGGCTGATGTCAGAAAGCGTGTGAAGGGACGATTTGTGAAAGCTGGTGATGTTTATGACTATGACCCTTTGAGCGAAACCAGAAGCTACTGA 1239 0.4439 MGYLCDFCGDQRPLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCTEENISLCQNCDWLGHGTMPSSSAHNRQTINCYTGCPSLAELSSLWSFFSVIPSIGETCEQELGLMGINENSDSSTWVTSESQNVSGSAQVTDLPSQNKSWVGTSSMPESSSKPRLLDHPPESADECIPKLNLPHKNSPGIFEDNDLYDDFNMDEVDLDLEKYEELFGMTLSHSEDLFENGGIDSLFGAKEMSASAGDSNCQGAFAAEGSSVGLVNAVQPACSNAASADSMLSSRTEPILCITGRQSQSNISFSGKSKDSSAADFQDCGASSMLLMGEPPWSAPCTESSVKSASRSDAVLRYREKRKARKFEKRVRYVSRKARADVRKRVKGRFVKAGDVYDYDPLSETRSY 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0400 412 CDD Bbox1_BBX-like 4 47 - -
Lal6g0400 412 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lal6g0400 412 MobiDBLite consensus disorder prediction 133 172 - -
Lal6g0400 412 SMART bboxneu5 48 90 IPR000315 GO:0008270
Lal6g0400 412 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal6g0400 412 Pfam CCT motif 355 397 IPR010402 GO:0005515
Lal6g0400 412 CDD Bbox1_BBX-like 47 90 - -
Lal6g0400 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 412 - -
Lal6g0400 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal6g0400 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 412 - -
Lal6g0400 412 MobiDBLite consensus disorder prediction 133 186 - -
Lal6g0400 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0400 Lal-Chr6 2513544 2518002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0400 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 51.408 7.18e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal6g0400 CCT 4.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0400 - - gmx:100783016 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1221 18 15009962 15014519 Lal6g0400 6 2513544 2518002 LSH
Lal22g0376 22 2400913 2406087 Lal6g0400 6 2513544 2518002 LSH