Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0398 ATGTCAGGCCGCGGAAAGGGAGGAAAGGGTTTGGGTAAAGGAGGAGCAAAGAGGCATCGGAAGGTTCTTCGCGATAACATCCAAGGTATTACTAAGCCCGCGATTCGAAGACTCGCTAGAAGGGGAGGAGTTAAGAGAATAAGTGGGTTGATCTATGAGGAAACCAGAGGAGTGTTGAAGATCTTCCTCGAGAACGTGATTCGTGATGCGGTGACTTACACGGAGCATGCGAGAAGAAAAACGGTCACAGCTATGGATGTGGTCTATGCTCTTAAGAGGCAAGGAAGGACTCTCTATGGTTTTGGAGCCACAAGAAATTTTCTACATGTTGAAAAGCTTTGGAATCTTCAAATGAAGAAAACACAAAGCCATAATTCCAATCAATCTAGCAGAAGAAAACAGGATACTGATCTCTATGATGTTAGTGCAGACAATCCTAAGACTCATCCTGTGCTGAAATATTTCAAGTCTTCTATCAAGAAATTTGCAGCTTTTTTTACACTGGTTCTCTCTGGTAAAAGAAAAACAGCCTCAAAAGTTATTGGAAGTTATGACAAAAAGGTTTCAACAAAACTCAGAGGCATATCTTCTTCAACAGATTCATCAATTGAAGGTACCAACAAAAGTTCATCAATACGGAAGTTTTCCTCTTCCTATGCATCAGCTAGCACTGCAAGTGAACAACTTGGAATTGGAAACTTTTCCTTTGAAGAAATTTACAATTCAACAGCAAAATTCTCTCCAGAAAATATTATTGGGAAGGGTGGATTTGGAACAGTGTATAAGGGAAAGCTTAATGATGGAACTCTTGTGGCGGCGAAGCGGGCCGGGAAGGATGTACTAAACACACACTTTTCTGAGTTCAAGAATGAAATATACACCTTGTCAAAAATTGAGCATCTGAATCTTGTAAGGTTATATGGATACGTGGAGCATGGTGAGGAGAAGATTGTTGTTGTTGAATATGTTAGTAATGGAACACTTAGAGAACATCTAGATGGTACTAGGGGAGATGGACTAGAAATTGGTCACCGTCTAGACATAGCAATTGATGTTGCTCATGCAATCACTTACCTTCATATGTACACAGATAATCCAATTATTCATAGAGACATTAAAGCATCAAACATCCTAATCACTGAGAACCTAAGGGCTAAAGTGGCAGATTTTGGTTTCGCACGATTATCTGATGACCCTGCTGCAACTCATATTTCAACTGAAGTTAAAGGAACAGCTGGCTATATGGATCCTGAGTATCTTAGAACATATCAACTCACTGACAAGAGTGATGTCTATTCTTTTGGTGTATTGCTTGTTGAAACCATGACAGGAAGACATCCAATAGAACCAAAGAGAGCCATTAACGAGAGAGTTACAATCCGATGGGCAATGCAGGTGCGGAAAGAAGGGGATGCTGTGATAGCCATGGATCCGAGATTGCGAAGAAGTCCATCCTCCGTCAAGGCAGTGAATAAGGTTCTGAATCTAGCTTTCCACTGCCTTGCGCCTTCCAAACAATCAAGGCCATCCATGAAGAGTTGTGCAGAAGTTCTATGGGCCATCCGTAAAGTTTTTAAAGATGAAACCCTTTCATATGATCCTACCCTTCCTTCTCACCATCCTGAAACTTTTCCTTAG 1638 0.4109 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGATRNFLHVEKLWNLQMKKTQSHNSNQSSRRKQDTDLYDVSADNPKTHPVLKYFKSSIKKFAAFFTLVLSGKRKTASKVIGSYDKKVSTKLRGISSSTDSSIEGTNKSSSIRKFSSSYASASTASEQLGIGNFSFEEIYNSTAKFSPENIIGKGGFGTVYKGKLNDGTLVAAKRAGKDVLNTHFSEFKNEIYTLSKIEHLNLVRLYGYVEHGEEKIVVVEYVSNGTLREHLDGTRGDGLEIGHRLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILITENLRAKVADFGFARLSDDPAATHISTEVKGTAGYMDPEYLRTYQLTDKSDVYSFGVLLVETMTGRHPIEPKRAINERVTIRWAMQVRKEGDAVIAMDPRLRRSPSSVKAVNKVLNLAFHCLAPSKQSRPSMKSCAEVLWAIRKVFKDETLSYDPTLPSHHPETFP 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0398 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
Lal6g0398 545 SUPERFAMILY Histone-fold 3 102 IPR009072 GO:0046982
Lal6g0398 545 SMART serkin_6 246 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0398 545 PANTHER RECEPTOR-LIKE PROTEIN 55 131 531 - -
Lal6g0398 545 ProSitePatterns Protein kinases ATP-binding region signature. 252 278 IPR017441 GO:0005524
Lal6g0398 545 PRINTS Histone H4 signature 5 16 IPR001951 GO:0003677|GO:0030527
Lal6g0398 545 PRINTS Histone H4 signature 20 39 IPR001951 GO:0003677|GO:0030527
Lal6g0398 545 PRINTS Histone H4 signature 40 60 IPR001951 GO:0003677|GO:0030527
Lal6g0398 545 PRINTS Histone H4 signature 62 76 IPR001951 GO:0003677|GO:0030527
Lal6g0398 545 PRINTS Histone H4 signature 77 89 IPR001951 GO:0003677|GO:0030527
Lal6g0398 545 PRINTS Histone H4 signature 89 100 IPR001951 GO:0003677|GO:0030527
Lal6g0398 545 Pfam Centromere kinetochore component CENP-T histone fold 42 97 IPR035425 -
Lal6g0398 545 SUPERFAMILY Protein kinase-like (PK-like) 226 521 IPR011009 -
Lal6g0398 545 Gene3D Phosphorylase Kinase; domain 1 205 322 - -
Lal6g0398 545 Pfam Protein tyrosine and serine/threonine kinase 250 518 IPR001245 GO:0004672|GO:0006468
Lal6g0398 545 MobiDBLite consensus disorder prediction 119 141 - -
Lal6g0398 545 Gene3D Transferase(Phosphotransferase) domain 1 323 533 - -
Lal6g0398 545 ProSiteProfiles Protein kinase domain profile. 246 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0398 545 Gene3D Histone, subunit A 2 103 IPR009072 GO:0046982
Lal6g0398 545 ProSitePatterns Histone H4 signature. 15 19 IPR019809 GO:0000786|GO:0003677
Lal6g0398 545 CDD H4 18 101 IPR001951 GO:0003677|GO:0030527
Lal6g0398 545 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 131 531 - -
Lal6g0398 545 SMART h44 16 90 IPR001951 GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0398 Lal-Chr6 2502820 2508502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0398 230 518 Receptor kinase-like Gene Family AT3G58690 41.611 5.20e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lal6g0398 PK_Tyr_Ser-Thr 7.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0398 - - gmx:100811511 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0104 22 637080 641770 Lal6g0398 6 2502820 2508502 LSH