Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0394 ATGAGCTTGTTTCTTTTCATTCCCTCTCGCCGCCATTGCTTCGCTTCTGTTTGTTGCTGCGTTTGGCTAAACCTTCTCTTCCAACCGCTTCAACCTTTTTCCTCTCAAAATGTTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTTCAAACCCCTAATTCTTTCTTCATGGATGTTAAGTGTCAAGGTTGCTTCAACATTACCACTGTCTTCAGCCACTCTCAGACAGTTGTGGTATGCGGCAATTGCCAGACCGTCCTATGCCAACCAACAGGAGGAAAGGCAAGGCTGACCGAGGGTTGCTCGTTTAGGAAGAAGGGAGACTGA 333 0.4715 MSLFLFIPSRRHCFASVCCCVWLNLLFQPLQPFSSQNVELEKRKHKLKRLVQTPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0394 110 Pfam Ribosomal protein S27 54 108 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lal6g0394 110 Hamap 30S ribosomal protein S27e [rps27e]. 48 108 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lal6g0394 110 ProSitePatterns Ribosomal protein S27e signature. 62 94 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lal6g0394 110 PANTHER 40S RIBOSOMAL PROTEIN S27 38 109 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lal6g0394 110 SUPERFAMILY Zn-binding ribosomal proteins 54 108 IPR011332 GO:0006412
Lal6g0394 110 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 38 109 - -
Lal6g0394 110 Gene3D - 32 109 IPR023407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0394 Lal-Chr6 2486406 2487671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0394 38 110 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 93.151 1.19e-47 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0394 K02978 - fve:101293775 150.984