Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0393 ATGAAGTGGGAAACAGAAATCCCCTCTCCTTCACCATACACCTCAAACTCAAATTGGTATGTGGAAAATAACATGAACAACACAAAATGGACAGCTTCAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGTATGATAAGGAGACACCAGACAGGTGGCACAAATTGGCAGCAATGATACCAGGAAAGACAGTTTCTGATGTGATGAGACAATACAAGGAATTAGAAGCAGATGTTTGTAACATAGAGGCTGGTTTGGTCCCAGTTCCTGGTTATGATAGTGCTACTAATACAATTACTACTACTACCTCACCCTTTACCTTAAACTATATGATCAACACACATCATGGCTATGATGAGTTTAAAGGAGGACTCAGTGGAAAGAGATCATCAGGAAGACCTCCTGAACATGAAAGGAAGAAAGGAGTTCCATGGACAGAAGAGGAACATAAATTGTTTCTACTGGGACTGAAGAAGTATGGGAAAGGTGATTGGAGAAACATATCCAGGAATTTTGTTATTACAAGAACTCCAACTCAAGTGGCTAGCCATGCTCAAAAGTACTTCATCAGACAACTTTCAGGAGGCAAAGATAAGAGAAGGGCTAGCATCCATGACATAACAACAGTTAATATCACAGAAACTACTTTAACTTCTTCAGATGACACCAAGAATTCCACTTCACCAGAACATTCCATGATGCTCTCACAGGTACAGCAGCAACCAAATTCTAATGCTACTTCACCAACAGCTCATTTACAGTGGGATATTCAGCTAAATGCAGGAGCATCTATGTCTATGAATCATGTACATGAAAAATTGTTCATGTCTCCTTATGATGCTAGCTCCTATGGGCTTAAAATGCAAGGCCAAAATCTGCGTCACGAGTCTTCATACTTAGAGCCTCAGACACAAAACATGGTTTTCCAAATGCAACAATCCTCAGAACACTTTTCCCATGCATAA 966 0.4006 MKWETEIPSPSPYTSNSNWYVENNMNNTKWTASENKLFENALAVYDKETPDRWHKLAAMIPGKTVSDVMRQYKELEADVCNIEAGLVPVPGYDSATNTITTTTSPFTLNYMINTHHGYDEFKGGLSGKRSSGRPPEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNITETTLTSSDDTKNSTSPEHSMMLSQVQQQPNSNATSPTAHLQWDIQLNAGASMSMNHVHEKLFMSPYDASSYGLKMQGQNLRHESSYLEPQTQNMVFQMQQSSEHFSHA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0393 321 MobiDBLite consensus disorder prediction 122 144 - -
Lal6g0393 321 CDD SANT 29 75 IPR001005 -
Lal6g0393 321 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 296 IPR043363 -
Lal6g0393 321 ProSiteProfiles SANT domain profile. 145 193 IPR017884 -
Lal6g0393 321 ProSiteProfiles Myb-like domain profile. 137 189 IPR001005 -
Lal6g0393 321 Pfam Myb-like DNA-binding domain 144 189 IPR001005 -
Lal6g0393 321 ProSiteProfiles Myb-like domain profile. 22 76 IPR001005 -
Lal6g0393 321 Gene3D - 22 89 - -
Lal6g0393 321 SUPERFAMILY Homeodomain-like 139 192 IPR009057 -
Lal6g0393 321 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 140 192 IPR006447 GO:0003677
Lal6g0393 321 SUPERFAMILY Homeodomain-like 28 83 IPR009057 -
Lal6g0393 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 193 IPR017930 -
Lal6g0393 321 Gene3D - 143 193 - -
Lal6g0393 321 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 296 - -
Lal6g0393 321 CDD SANT 144 189 IPR001005 -
Lal6g0393 321 SMART sant 26 78 IPR001005 -
Lal6g0393 321 SMART sant 141 191 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0393 Lal-Chr6 2476298 2479256 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal6g0393 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0393 - - gmx:778181 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0370 22 2383737 2386250 Lal6g0393 6 2476298 2479256 LSH