Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0388 TCTCCTTTCATGAAAATAATCATGACAAGAGGAGGTCATGGTTTTGTTGATGTTCCAATTTATATAAAGGCCACTGATTCCTCTTCCATGCATATATCATGCCCTCCTTTGACAGCTATAGACAGGTTCTTATGGAACCAACAGGCACACAATATGGTTGCAAAAAACAACAATGCATCAAGTGCTTCTGCAGACGAGTTTTCTGTTTTTTCCAGTTTTGGTGGTTTAAACCATAGGTTTCAGTGGCCATATACTCAAGAAGCAAGCTTTGTTTATGGGCGCTTAGGAAATGAAGAAGCTTTGAAGTGGACAAACATGCACCAAACCCCCGAAAAGCAAGTGAAGAGTGTTAAAGTGATGGGAAGGAGAACTAAGAAAGAGTCTAGTTCTGTGTCTTTGATCAAAGGACAGTGGTCTGATGAAGAAGACAGGAAACTGATAAAGTTTGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAATTTGGATGGAAGAATTGGCAAGCAGTGTAGAGAGAGATGGAATAATCATCTGCGTCCAGATATTAAGAAAGATAGTTGGAGTGAAGAAGAGGAGAGAAGATTAGTAGAAACCCATGCCAAAGTTGGAAATCGTTGGTGTGAGATTGCGAAGTGCATTCCAGGAAGAACAGAAAATGCAATAAAGAACCATTGGAATGCCACAATAAGGAGGCAAAACTCAAAGAGAAGGAACAGGAAACGTAACTCTAATGGAAGAAAACCAATGTCTTCTATACTTGAAGACTATATCAAAACCAAGACTCTAATTAACACTCCCACAACAACACCATTTTCAAAGAAATCTGAAGCAAACAATTTAAACCTTGTGTCTGAAGAACCCTTTGATCAATTATCAGTTTCTAATGAGTTACTCTACATGCAACAAGTTTTCACTGAGAATCAGAATCAACAATCACTTTTCAATGTTGGAGACTACTCTAACTACTACATGACTGAAAGTGGATATCTTGCTTCTGATCTCTACCTCTCTCATCACTTGTCTAATGTTGAATATGGGAATCAAAACATGAACATGGATTTTCAGGTGGAGAATGATCAAGAGTGTTCAGATGGAAAAGAGAGATGGACTTGA 1122 0.3832 SPFMKIIMTRGGHGFVDVPIYIKATDSSSMHISCPPLTAIDRFLWNQQAHNMVAKNNNASSASADEFSVFSSFGGLNHRFQWPYTQEASFVYGRLGNEEALKWTNMHQTPEKQVKSVKVMGRRTKKESSSVSLIKGQWSDEEDRKLIKFVKQYGERKWAQIAENLDGRIGKQCRERWNNHLRPDIKKDSWSEEEERRLVETHAKVGNRWCEIAKCIPGRTENAIKNHWNATIRRQNSKRRNRKRNSNGRKPMSSILEDYIKTKTLINTPTTTPFSKKSEANNLNLVSEEPFDQLSVSNELLYMQQVFTENQNQQSLFNVGDYSNYYMTESGYLASDLYLSHHLSNVEYGNQNMNMDFQVENDQECSDGKERWT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0388 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 185 IPR017930 -
Lal6g0388 373 Gene3D - 188 254 - -
Lal6g0388 373 CDD SANT 189 229 IPR001005 -
Lal6g0388 373 PANTHER MYB PROTEIN-RELATED 36 259 - -
Lal6g0388 373 SMART sant 134 183 IPR001005 -
Lal6g0388 373 SMART sant 186 234 IPR001005 -
Lal6g0388 373 CDD SANT 138 181 IPR001005 -
Lal6g0388 373 Pfam Myb-like DNA-binding domain 138 198 - -
Lal6g0388 373 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Lal6g0388 373 MobiDBLite consensus disorder prediction 232 247 - -
Lal6g0388 373 Gene3D - 134 186 - -
Lal6g0388 373 SUPERFAMILY Homeodomain-like 132 228 IPR009057 -
Lal6g0388 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 236 IPR017930 -
Lal6g0388 373 ProSiteProfiles Myb-like domain profile. 130 181 IPR001005 -
Lal6g0388 373 MobiDBLite consensus disorder prediction 232 253 - -
Lal6g0388 373 PANTHER MYB TRANSCRIPTION FACTOR 36 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0388 Lal-Chr6 2455009 2456888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0388 26 320 MYB Transcription Factor Family AT5G58850 41.049 2.82e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal6g0388 Myb_DNA-bind_6 1.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0388 K09422 - aprc:113874412 333.569