Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0376 ATGACGTGTTCCGTCGTGGCTTCAAACTCTCCGGTGTTCTCACCCTCTTCTTCTCTTTTTTGCAACATTTCTCCCTCTCCAGATTCTCATACCCTTTCTCTTTCTCATCTCAAACCTTCTTCTTCTGCAACGGTATCGTCTTGCTCTTCTCCTTCTAATTCTACTTCTTCTCCTTCTTCACCCTTCCGCCTTCGCCTTTCTAAGCCACACACTGCCTCGTCTACCTCCCCAAACGGCCCCATTTTGAAGAGGAAGAGGCCTGGCAGGCTTGATATTCCGGTTTCTTCTCTCAGCTTTGGGGTTCCTGCGACGCCGTCCGCGGTGGCGAGTGATGTGATGGAGGCTGAGGGAGATGGGTTTTCTGTGTACTGTAAAAGAGGTAGGAGGGAGTATATGGAGGATCGTTATTCTGCTACTGATAATCTACGCGGTGAATCCAAGCTGGCTTTATTTGGTGTATTTGATGGGCATGGAGGTGCAAAAGCTGCAGAATTTGCTGCGAAGAACTTGGAAAAGAATGTCCTAGATGAAGTGATCATTAGCGATGAAGAAGATATTGGGGAAGCAGTGAAGCGTGGTTACCTCAACACTGATTCTGATTTCTTAAAAGAGGATCTCAATGGTGGTTCTTGCTGTGTAACAGCACTGATTAGAAACGGTAACCTTGTGGTGTCCAATGCTGGTGATTGCCGTGCTGTCATCAGTAGAAACGGTGTTGCAGAGGCCCTAACATCTGATCATCGACCTTCAAGGGAAGATGAAAAAGAGAGAATCGAGACTCTGGGTGGCTATGTTGATTTATGCCGTGGTGTTTGGAGGATCCAGGGATCTCTTGCTGTGTCAAGGGGAATCGGAGATCGCCACATGAAACAATGGGTCACAGCAGAACCCGAAACCAAAGTTCTCAGAATTGAAACTGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAAGAAGCAGTAGATATAGCTCGTCCTTTTTTGATTGGGAAGAAGAAATCACAACCATTGCTGGCTTGTAAAAAGCTAGTAGATTTATCTGTTTCGCGAGGCTCTATGGATGATACAAGTGTTATGCTAATCAAGTTGGAGCATTATATTTGA 1125 0.4533 MTCSVVASNSPVFSPSSSLFCNISPSPDSHTLSLSHLKPSSSATVSSCSSPSNSTSSPSSPFRLRLSKPHTASSTSPNGPILKRKRPGRLDIPVSSLSFGVPATPSAVASDVMEAEGDGFSVYCKRGRREYMEDRYSATDNLRGESKLALFGVFDGHGGAKAAEFAAKNLEKNVLDEVIISDEEDIGEAVKRGYLNTDSDFLKEDLNGGSCCVTALIRNGNLVVSNAGDCRAVISRNGVAEALTSDHRPSREDEKERIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHMKQWVTAEPETKVLRIETEHDLLILASDGLWDKVSNQEAVDIARPFLIGKKKSQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0376 374 CDD PP2Cc 119 370 IPR001932 -
Lal6g0376 374 ProSitePatterns PPM-type phosphatase domain signature. 150 158 IPR000222 GO:0043169
Lal6g0376 374 Gene3D - 119 373 IPR036457 -
Lal6g0376 374 SMART PP2C_4 109 368 IPR001932 -
Lal6g0376 374 SUPERFAMILY PP2C-like 120 371 IPR036457 -
Lal6g0376 374 MobiDBLite consensus disorder prediction 43 80 - -
Lal6g0376 374 MobiDBLite consensus disorder prediction 43 87 - -
Lal6g0376 374 Pfam Protein phosphatase 2C 120 362 IPR001932 -
Lal6g0376 374 ProSiteProfiles PPM-type phosphatase domain profile. 119 370 IPR001932 -
Lal6g0376 374 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 373 - -
Lal6g0376 374 PANTHER PROTEIN PHOSPHATASE 2C 3 373 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0376 Lal-Chr6 2397560 2400410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0376 1 374 PP2C-type Phosphatase Gene Family AT2G30020 62.250 4.01e-163 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0376 K17506 - gmx:100797934 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0376 6 2397560 2400410 Lal6g0376 6 2397560 2400410 ECH
Lal18g1242 18 15119142 15121475 Lal6g0376 6 2397560 2400410 LSH
Lal22g0351 22 2252511 2254903 Lal6g0376 6 2397560 2400410 LSH
Lal11g0937 11 12673434 12676066 Lal6g0376 6 2397560 2400410 PCT
Lal6g0376 6 2397560 2400410 Lal11g0937 11 12673434 12676066 PCT