Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0375 ATGGCTTCATGGGTGAGAGGAAAGTGCATCGGTAAGGGCGCGTTTGGCACCGTGAATATTGGGGTTACTAAATCTAACGGTCAAGTATTTGCGGTTAAGTCAGTTGATCGCAAAATTGGTCTACCGGGTCAGATAGCGGCGCTGGAGAACGAAATTAAGATTCTACGCCGTATGGTTTCGCCTCACGTGGTAAACTTTCTCGGCGATGATATCACGTGCGAGGCAACGACGTCGTATCGGAACCTTCACTTAGAGTACTTGCCAGGTGGCACCGTCGCTGACATGGACCATGATGACATGGACGAATTGTTAGTGAGGCGCTACGCTTGGTGCCTGGTTCACGCGCTGCGCCACGTTCACGAACACGGCGTGGTACACTGTGACGTGAAGGGAAGTAACGTTCTTCTCGCCGGTGATGGTTGCGTCGCCAAGCTCGCCGATTTCGGCTCCGCTGTGGAGTTTGATCACTCAGCTAAGGTAGTGCCACGTGGGAGCCCGATGTGGATGGCGCCGGAAGTGATTCGCCGGGAATATCAGGGACCGGAGTCCGACGTGTGGTCTCTTGGATGCACCGTGATTGAGATGATTACCGGGAAACCACCGTGGGAGGATAACGGCGTTGACACGCTTCGTCAAATTGGATTCTCCGGCGAGGTACCGGAGTTTCCGAGCGCGTTGTCAGAGCTTGGACGCGATTTTCTGGAGAAATGTCTAAGAAGAGAGATAAGAGAAAGGTGGAGCTGTGATCAGCTACTTCAGCATCCATATTTGGTGATAGACTCTCCAATTAAAGTTACAGAATCGTCGCCACGTTGCGTTATGGATTGGTTTGAGTCGGAATTCACCGAGTCAGAAGATGAAGAGATTGAATTTTATAGTGAAAATTCAGCGAAGGGTAGGATTGGTAAATTAGCGACGGGGTTAAGGGCAAATTGGGAAACAGAGGGTTGGGTGGAGGTAAGGGCAGAATTGTCATGTGAAGCAGAAGCATCAACTACAACCACAACCGGAGTGTGTGAGTTAGAGGAGGAAGAAATAAGGTTAGATTGGGAAATCGAGAATGTAACGAGGGTAGAAGAGGAAATGGAGGTAGGAAGTAGTTTAGAATATTCGGATTCTGAAAGATCTGGAACAGCAAAAAATGAAAGGGTAAAACGGGAAATACGTAGAAATGGGAGGTTGGTGTGGCGGTGTGAGTGTGACGAGTGCAACCGCAACCGTAACCGTCGAATTGGTTGTGGTTGTCGGTATGGGCATAAGTTAGATAGCATAAAAGGAATATCCAACATTTACAGCTTACCTTGTAAATTAATCAAATCAATGAAATCGTATTATTTATTCGAATATGCTCCGTTTTTTCAATTATTCTCTGTTGCTTACTTATTAATTTAA 1392 0.4741 MASWVRGKCIGKGAFGTVNIGVTKSNGQVFAVKSVDRKIGLPGQIAALENEIKILRRMVSPHVVNFLGDDITCEATTSYRNLHLEYLPGGTVADMDHDDMDELLVRRYAWCLVHALRHVHEHGVVHCDVKGSNVLLAGDGCVAKLADFGSAVEFDHSAKVVPRGSPMWMAPEVIRREYQGPESDVWSLGCTVIEMITGKPPWEDNGVDTLRQIGFSGEVPEFPSALSELGRDFLEKCLRREIRERWSCDQLLQHPYLVIDSPIKVTESSPRCVMDWFESEFTESEDEEIEFYSENSAKGRIGKLATGLRANWETEGWVEVRAELSCEAEASTTTTTGVCELEEEEIRLDWEIENVTRVEEEMEVGSSLEYSDSERSGTAKNERVKREIRRNGRLVWRCECDECNRNRNRRIGCGCRYGHKLDSIKGISNIYSLPCKLIKSMKSYYLFEYAPFFQLFSVAYLLI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0375 463 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 350 - -
Lal6g0375 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal6g0375 463 SUPERFAMILY Protein kinase-like (PK-like) 4 258 IPR011009 -
Lal6g0375 463 Pfam Protein kinase domain 6 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0375 463 CDD STKc_MAPKKK 3 257 - -
Lal6g0375 463 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 350 - -
Lal6g0375 463 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0375 463 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Lal6g0375 463 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal6g0375 463 Coils Coil 341 361 - -
Lal6g0375 463 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0375 Lal-Chr6 2390701 2392092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0375 4 330 MAP Kinase Kinase Kinase AT2G30040 60.725 6.30e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal6g0375 Pkinase 1.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0375 - - mtr:MTR_5g071560 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0375 6 2390701 2392092 Lal6g0375 6 2390701 2392092 ECH
Lal18g1243 18 15130212 15131940 Lal6g0375 6 2390701 2392092 LSH