Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0362 ATGGCTTCTTCATCTGGTAGCATAGACACTTCTGCAAACTCTTACAACAACTTCACCTTCTCAACACACCCTTTCATGACAACATCATTTTCTGACCTTTTAGCTTCTCCCATAGATGATAATAATATTAATAATAAATCTCGAATAGCAGAGAGAACTGGTTCTGGTGTACCAAAATTCAAGTCTATACAGCCTCCTTCACTTCCTCTATCTCCTCCTCTCTTTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGATCTTCTTGACTCTCCTGTTCTCTTAAACTCTTCTCATATTTTGCCATCTCCAACAACGGGAGCATTTGCTGATAAGGGTTACAATGATAGAAAGAACAATTCTGGTGGAAACCAACAAATTATCAAAGTAGAAGATAAAAACTTCTCAAACTTCTCTTTTCAAACCCAACCAGGACCACCTCCTGCATCTACTGCAACTTTTCAATCTTCAAATGGCACAGTTCAAACTCAACAGCCATGGAATTATCAGCAAGCTACAAAACAAGATAGTTTTTCTTCAGGGATGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGCTTTTCCCCTGATATTGCAAGTGTCAGAACTAATAATAACCACAGTTATCAACAACAGCCACAAGTCCAAACCTTAAGTAGAAGGTCAGATGATGGTTACAATTGGAGAAAATATGGTCAAAAACAAGTGAAAGGGAGTGAAAACCCAAGGAGTTATTACAAATGCACATACCCTAACTGTCCTACAAAAAAGAAGGTAGAGAGGTCTTTGGATGGACAAATTACTGAGATAGTTTATAAGGGTAGTCATAACCATCCTAAACCTCAGAACACTAGGAGAAATTCATCATCTTCCTCTTCTGTTTCAATTATTCCTTCAAATCTCATCACCTCAGATATCCAAGATCAATCATATGCCACACATGGCAGTGGACAAATGGACTCTGTTGCCACACCAGAAAATTCATCAATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGGGTAGATCAGGTGGTGGGGATGAGTATGATGAAGATGAACCTGATTCAAAAAGATGGAAAGTTGAAGGTGATAGCGAGGGTATATCAGCTTCTGGAAATAGAACAGTGCGAGAACCAAGGGTTGTGGTTCAGACAACAAGTGACATTGATATTCTTGATGATGGGTACAGATGGAGGAAATATGGACAGAAAGTAGTCAAGGGTAATCCAAATCCAAGGAGTTACTACAAGTGCACACACTCAGGATGTCCAGTGAGGAAGCACGTAGAAAGAGCCTCACATGACCTAAGAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGATATCCCTGCAGCACGTGGCAGTGGCAACCATTCAGTAAATAGACCAATGCCAAACAACAATACTTCAAACTCTACCAATATTGCAGCCACTAGTGCCTTAAGGCCCACGGCATTGAACCACCCTACTAACAACAATTCTCTTCAGAGTCTTAGATCAGAAGGGCAATCACCCTTCACACTAGACATGCTGCAGAGCCCTGGAAGTTTTGGATTCTCAATGTTGGGGAATCCAATGGGATCTTACATGAATCAGCAACAACTATCTGACAATGTGTTTTCTTCCAGAACCAAGGAAGAGCCCAGAGATGACACGTTCCTTGATTCTTTGCTATGCTGA 1713 0.4069 MASSSGSIDTSANSYNNFTFSTHPFMTTSFSDLLASPIDDNNINNKSRIAERTGSGVPKFKSIQPPSLPLSPPLFSPSSYFAIPPGLSPADLLDSPVLLNSSHILPSPTTGAFADKGYNDRKNNSGGNQQIIKVEDKNFSNFSFQTQPGPPPASTATFQSSNGTVQTQQPWNYQQATKQDSFSSGMSMMKTENSSSMQSFSPDIASVRTNNNHSYQQQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQNTRRNSSSSSSVSIIPSNLITSDIQDQSYATHGSGQMDSVATPENSSISIGDDDFEQSSQKGRSGGGDEYDEDEPDSKRWKVEGDSEGISASGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHSGCPVRKHVERASHDLRAVITTYEGKHNHDIPAARGSGNHSVNRPMPNNNTSNSTNIAATSALRPTALNHPTNNNSLQSLRSEGQSPFTLDMLQSPGSFGFSMLGNPMGSYMNQQQLSDNVFSSRTKEEPRDDTFLDSLLC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0362 570 Pfam WRKY DNA -binding domain 402 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 Pfam WRKY DNA -binding domain 229 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 MobiDBLite consensus disorder prediction 353 373 - -
Lal6g0362 570 MobiDBLite consensus disorder prediction 317 352 - -
Lal6g0362 570 ProSiteProfiles WRKY domain profile. 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 SUPERFAMILY WRKY DNA-binding domain 393 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 ProSiteProfiles WRKY domain profile. 396 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 MobiDBLite consensus disorder prediction 278 301 - -
Lal6g0362 570 SMART WRKY_cls 401 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 SMART WRKY_cls 228 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 MobiDBLite consensus disorder prediction 141 228 - -
Lal6g0362 570 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 544 IPR044810 GO:0003700
Lal6g0362 570 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 44 544 - -
Lal6g0362 570 MobiDBLite consensus disorder prediction 141 233 - -
Lal6g0362 570 SUPERFAMILY WRKY DNA-binding domain 227 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 MobiDBLite consensus disorder prediction 317 383 - -
Lal6g0362 570 MobiDBLite consensus disorder prediction 551 570 - -
Lal6g0362 570 Gene3D WRKY domain 388 454 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0362 570 MobiDBLite consensus disorder prediction 283 301 - -
Lal6g0362 570 Gene3D WRKY domain 213 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0362 Lal-Chr6 2302659 2305975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0362 226 569 WRKY Transcription Factor Family AT2G38470 56.145 6.87e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal6g0362 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0362 K13424 - gmx:100127393 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0362 6 2302659 2305975 Lal6g0362 6 2302659 2305975 ECH
Lal18g1264 18 15269399 15272972 Lal6g0362 6 2302659 2305975 LSH
Lal22g0332 22 2113617 2117179 Lal6g0362 6 2302659 2305975 LSH
Lal5g1010 5 12460707 12465562 Lal6g0362 6 2302659 2305975 PCT
Lal3g0662 3 5175762 5179822 Lal6g0362 6 2302659 2305975 PCT
Lal6g0362 6 2302659 2305975 Lal5g1010 5 12460707 12465562 PCT
Lal6g0362 6 2302659 2305975 Lal3g0662 3 5175762 5179822 PCT