Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0354 ATGTCAGAGAGTTTCAGCACCACTCTCTTCGATAAGTATGAGGTTGGTAGGCTCTTAGGTTGCGGCGCATTTGCCAAGGTCTATCATGCTCGAATTATGATGACAGGGGAAAGCGTTGCAATCAAGATAATAAACAAAAAGAAGATTGTTGGAACTACTCTCGCAACCAACGTGAAGCGTGAGGTTTCAATCATGAGCCAACTCCATCATCCCAACATTGTGAAACTCCATGAAGTCCTCGCAACCAAAACCAAAATCTACTTTGTTATGGAATTCATCAAAGGTGGTGAGTTATTCGCTAAAATCGCCAAAGGCCGGTTCAGTGAAGATCTCAGTCGTCGCATTTTTCAGCAGTTAATCTCCGCCGTCGGTTACTGTCACTCCCGCGGTGTATTCCACCGTGATCTTAAGCCAGAAAATCTCCTTATCGACGAGAATGGTAACTTAAAAATATCAGATTTCGGTCTCAGTGCGGTGAAGAATCAGATCCGAACAGATGGTTTGTTACACACGCTTTGCGGCACTCCTGCTTACGTAGCACCAGAGATTTTGGCTAAGGGAGGTTACGATGGATCCAAAGTTGACGTGTGGTCTTGTGGTATTATTCTTTTTGTTCTCGTTGCTGGTTATCTTCCGTTCAATGATACAAACCTTATGGTGATGTATAAGAAGATTTATAAAGGAGTATTTCGGTGTCCAAGGTGGTTCTCACTGGAGCTACGATGGTTTTTGTCGCGGTTGCTTGACACAAACCCGGTGACGAGGATCACGATTGATGAGATTCTCAAGGATCCGTGGTTTAAGAAAGGGTACAAGAATATCAAGTTTCATGAAGAATGGAAGGAGAATAATGAGGGTATGGAGAATGTTAAAGAGTTGAACGCGTTTGATATAATCTCATTTTCTTCAGGTTTGAATTTGTCCGGTTTGTTTAGTGTGGTGGAGAATTCTGAGAGGTTCGTGTTACGAAGTTCGCCGGAGAAGGTTTTGGAGACGGTGGAGGAAGTGGGGAAGGTGGAAAAGTTTGTAGTGAAGAGAATGAAAGAGTATGGGGTGGAGTTGGAAGGGGTGAATAGTAATTTTGGAATTTTGGTTGTGGTTTACCGGTTAACGGAGGAGGTGGTGGTGGTGGAGGTGAATAGAAGAGGTTGTGACATTCTTGATTTTAAGGATATTTGGATCAACAAGTTGAGGCCTCGTCTCTGTGATGTCGGGAGTTGTAGCAATCAACAGGTTGTCGGTAACTCTTGA 1251 0.4357 MSESFSTTLFDKYEVGRLLGCGAFAKVYHARIMMTGESVAIKIINKKKIVGTTLATNVKREVSIMSQLHHPNIVKLHEVLATKTKIYFVMEFIKGGELFAKIAKGRFSEDLSRRIFQQLISAVGYCHSRGVFHRDLKPENLLIDENGNLKISDFGLSAVKNQIRTDGLLHTLCGTPAYVAPEILAKGGYDGSKVDVWSCGIILFVLVAGYLPFNDTNLMVMYKKIYKGVFRCPRWFSLELRWFLSRLLDTNPVTRITIDEILKDPWFKKGYKNIKFHEEWKENNEGMENVKELNAFDIISFSSGLNLSGLFSVVENSERFVLRSSPEKVLETVEEVGKVEKFVVKRMKEYGVELEGVNSNFGILVVVYRLTEEVVVVEVNRRGCDILDFKDIWINKLRPRLCDVGSCSNQQVVGNS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0354 416 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0354 416 Pfam NAF domain 291 345 IPR004041 GO:0007165
Lal6g0354 416 PANTHER - 6 411 - -
Lal6g0354 416 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0354 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lal6g0354 416 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 411 - -
Lal6g0354 416 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lal6g0354 416 Gene3D Kinase associated domain 1, KA1 289 405 - -
Lal6g0354 416 Gene3D Phosphorylase Kinase; domain 1 9 94 - -
Lal6g0354 416 Gene3D Transferase(Phosphotransferase) domain 1 95 274 - -
Lal6g0354 416 ProSiteProfiles NAF domain profile. 288 312 IPR018451 GO:0007165
Lal6g0354 416 CDD CIPK_C 294 402 - -
Lal6g0354 416 SUPERFAMILY Protein kinase-like (PK-like) 9 279 IPR011009 -
Lal6g0354 416 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0354 Lal-Chr6 2249301 2250551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0354 6 412 CBL-interacting serine-threonine protein kinases AT2G30360 64.692 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal6g0354 Pkinase 2.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0354 - - gmx:100815088 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0354 6 2249301 2250551 Lal6g0354 6 2249301 2250551 ECH
Lal5g1277 5 15481264 15482580 Lal6g0354 6 2249301 2250551 PCT
Lal6g0354 6 2249301 2250551 Lal5g1277 5 15481264 15482580 PCT