Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0352 ATGTATTCCATGAAGGAGAACAAAGAAGATTGCAAGTTAGAACATGGTTATGTGGAAGCTGATCCAACTGGTCGCTATGGTCGGTTTGAAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATTGATGAGGTCCTTGGAATAGAGGTAGCATGGAATCAGGTCAAACTCAATGAGGCACTTCGCACACCGGACGATTTACAGCGGCTTTACTCAGAGGTTCATCTCCTCAGCACCCTCAAGCACTGGTCAATCATAGAATTCCATACCTCTTGGATTGATGTTGATAACAAGGCCTTCAACTTTGTTACAGAAATGTTCACATCAGGATCCCTCAGAGTATACCGGAATAAATATAAGCGAGTTAGCATAAAAGCAATAAAAAGTTGGGCACGCCAAATCTTACAAGGTCTTGTTTATCTTCATGGACATGATCCACCAGTAATCCATAGAGACCTCAAATGTGATAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTAGGACTAGCTGCAATTCTCCGCGGTTCTCAGCCAGCCCACAGTGTTATAGGCACCCCAGAGTTCATGGCACCAGAATTATATGAGGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTATTGGAATTGTTTACATCTGATTATCCATATAGTGAATGTTCTAACCCGGCACAGATTTACAAGAAAGTGACATTGGGTAAGCTACCAATGGCTTTTTATCGGATTGAAGATATGGAAGCTCAGAAGTTTATTGGAAAATGCCTAGGACCTGCATCGAAAAGACCATCAGCAAAAGATTTGTTGCTCGACCCTTTTCTTATGTCTGATGAATCATCATCACCAGCAAAGTTTGAAATTCAAAAGCCACTTTTGAATAATATTGAGACGGGAAAACTTCACTTGAGTGATAACTTAACTAGGACTGAAATGAAGATAATAGGGAAGCTGAATCCCGGAGATGATACAATCTTTCTCAAAGTGCAGATTCCTGATAAGGATGGTTCTGTTAGGAATGTATTTTTCCCCTTTGAAATTTTCACTGACACCCCCATTGATGTTGCATCTGAAATGGTAAAAGAATTGGAGATTGCTGATAGGGAGCCTTTCGAAATAGCAAATATGATTGAAGGAGAGATTTCTGCTCTTCTACCACATAAGAGGGAAAGTAACTGTTCAAATGCCTGCAATACAGTCAGTTGTGAAGATGATGACTATGACAACGGGCCTCATAATCATAACCACACATTCTCTTCATGTTCATCATTCCAAGAATCAATATCAAGTTTAGACAGTGGAAATTATTGGCCCCATGATGATTTGCTTGATGATACCAGTTCAAGATGTTCTTCACAAGGGACATGTTCCAACTTGATTTATTATTCTATGGATGACCAGGAGTACAATGTGTCTTCTATCAGAAAAGATAAACTACCCATCATTAGAAGTCAAAACAAGTGTACAAGGTTTTCTCCTAATGAAGAATTCAGCAATTGCAGCCAATGTAAAGTTGTAGTAGGATCACAGACACCTTCTACTCGTAAAAGTAAGAATGTTATCGACAATCGCAGACTGACAAGGAACAAGTCATTGATTGATCTAAGGAGCCAACTATTACACCGATCGCTGGTCGAGGAGGTTCACAAAAGACGGTTATTTCAGACAGTTGGTTCTGTGGAAAATATTGGATATGAGGCACCTTGTGATGTTTCCACAAAAAAGTCACTTCAAGGAGTGACAGGCAAGAAAAACTTTAGAGATGAAGATATTTAG 1806 0.3953 MYSMKENKEDCKLEHGYVEADPTGRYGRFEDVLGKGAMKTVYKAIDEVLGIEVAWNQVKLNEALRTPDDLQRLYSEVHLLSTLKHWSIIEFHTSWIDVDNKAFNFVTEMFTSGSLRVYRNKYKRVSIKAIKSWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLELFTSDYPYSECSNPAQIYKKVTLGKLPMAFYRIEDMEAQKFIGKCLGPASKRPSAKDLLLDPFLMSDESSSPAKFEIQKPLLNNIETGKLHLSDNLTRTEMKIIGKLNPGDDTIFLKVQIPDKDGSVRNVFFPFEIFTDTPIDVASEMVKELEIADREPFEIANMIEGEISALLPHKRESNCSNACNTVSCEDDDYDNGPHNHNHTFSSCSSFQESISSLDSGNYWPHDDLLDDTSSRCSSQGTCSNLIYYSMDDQEYNVSSIRKDKLPIIRSQNKCTRFSPNEEFSNCSQCKVVVGSQTPSTRKSKNVIDNRRLTRNKSLIDLRSQLLHRSLVEEVHKRRLFQTVGSVENIGYEAPCDVSTKKSLQGVTGKKNFRDEDI 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0352 601 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
Lal6g0352 601 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0352 601 CDD STKc_WNK 25 285 - -
Lal6g0352 601 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 588 - -
Lal6g0352 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lal6g0352 601 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Lal6g0352 601 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Lal6g0352 601 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 6 588 - -
Lal6g0352 601 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0352 601 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0352 Lal-Chr6 2233444 2237963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0352 17 584 MAP Kinase Kinase Kinase AT5G58350 59.310 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lal6g0352 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0352 K08867 - gmx:100272203 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0352 6 2233444 2237963 Lal6g0352 6 2233444 2237963 ECH
Lal18g1277 18 15369404 15373756 Lal6g0352 6 2233444 2237963 LSH
Lal5g1273 5 15448171 15453135 Lal6g0352 6 2233444 2237963 PCT
Lal6g0352 6 2233444 2237963 Lal5g1273 5 15448171 15453135 PCT