Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0350 ATGTTTGAATTGAATTTATTTGAAATGGAGTTTCGAGTTTGCATGAATGGTTCGTGCCGCGGTGTTGGGTATGAACGTGAATGGAAGAAGGGCTGGCCTCTGGAATCTGGTGAATTTGCCCGTCTCTGCAACAATTGCGGATCTGCTTATGAGAATTCAATTTTCTGTGAGAAATTCCATCCTAAGGAGACTGGTTGGAGGGAGTGCAGCTATTGCAACAAGTCTATCCACTGTGGATGTATAGTATCATTGTCTTTGTTCAAGCACCTTAGTTTTGGAGGTATAGGTTGTGTTAACTGTGCGAAGACTTCCCAACACCGTCTGAGATTGGACATTCAATGTCATATTGATGGTAGACTGTTGGTGGATAGTGTTGATGAAAGGAAACTTATGCAACTGTGTAGAATTGTTGAAGCTAGTGAATCGAGCCATTGCCCTCAACGTCAGAGAGATGACATATTTTCATTTATTGCTCCAGACAGCCAAGAAGTTAAGTGTTCCTTCGGGGAAGCAGATGCAAGATTTTCAAATGTGATGAAACCATCAAATCATTCATTAACATTTTCTTCATTACAAAACAGTAGACCAACATGGGAGAATAAAAATATGCATGATGCACTTGCACTGAGTATGTCTCTGGGAACCCCATCACAAAACACTGTCCTGCCTTCTGTTACAGAGAAGGAAGAAAGGAGACTTATATTGCCCAAACCATTGAAGACTGGGTTAACCACGATTCAGGAAAAAAATAATGGGATAATTTCTGAGGCACAAGTTCCCAAGCCACCTACTGAGTGTAGCGGCAAGCATCAGTTACTGCCTCGGTACTGGCCCAGGATAACTGATCAAGAGCTGGAGAAATTGTCTGTAGATTTGAAGTCCACAGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCCAAAGCCTGCGCTGAGGCTTATTTTCCCCCTATTTCGCATTCAGGAGGTCTTCCTTTGCCGTTCCAGGATGTTAAGGGGAATGAGTGGACACTTCACTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACACCTTTCATACAGTCCATGCAATTAAGTGCCGGTGATACTGTGACATTTAGTCGGATAGACCCTGGGGGAAAATTTGTTATGGGTTTCAGAAGGGCATCAAATTCTATACATACACAGAATGCCTCTGAATCTGCTCAATCTAATGACATCTCAACTAAGGAAACTATTCCTAGTCCAACTCAAAATCCGCACACAATAAGTAATTATCCTGATCTCCAGTCAAAGAAAGAGATCATGGAACCTCATTTAAATGGGCATCCAGAACATCTGCATTTGGGTACTGGATCTGATAAAAAATGCGAGGATATGACAAAAAATGATTTGTTGGAGCAGCCAATTTCAGCTTCATTGAAGAAGAGAACACGTAATATTGGGCCTAAAAATAAGAGGTTACTCATTCACAGTGAAGATGCAATGGGGTTCAGACTTACATGGGAAGAAGCACAAGACTTGCTTTATCCACCGCCCAGTGTCAAGCCAAACATTGTAACAATTGAGGACCAAGAAATTGAAGAGTACCATGAACCCCCAGTTATTGGAGAAAGAACTATATTCAATGCTTGTCCATCTGGGTCTTCGTGTTCTACACCAGAGGAGCATCCAGATGAAGTAGATAATCTTCTGAGAACCATCAAAGTTTCTAAGAAGAAGCATAGAAGGATGGAAAAGAGTGAGACAATTGAAGAACATGAGCCTTCTGGTTTAGAGGCTCTAGCCAATGCAGCAGTTTTAGGGGATATTCTTGTTGACCTTGCTGAGCCATCATCTGTAGTCACCACGAAACATCCAAGGCACCGTCCTGGATGCACTTGCATTGTGTGCATCCAGCCTCCAAGTGGAAAAGGTAAACATAAACCGACCTGTAATTGCCTTGCGTGTATGACTGTGAAATGCCGCCTCGAAACCCTCACGATGCGCAATAAGAAACGCCAATCAGAACGTAACGCAGATGTTTCTGCTTCCCAAAAAGATCAAATTCAGAAGAGGGATGAGACAGATGCCAATGGAGCATTGAAAGGTGATCCAAGTCAATGA 2139 0.4259 MFELNLFEMEFRVCMNGSCRGVGYEREWKKGWPLESGEFARLCNNCGSAYENSIFCEKFHPKETGWRECSYCNKSIHCGCIVSLSLFKHLSFGGIGCVNCAKTSQHRLRLDIQCHIDGRLLVDSVDERKLMQLCRIVEASESSHCPQRQRDDIFSFIAPDSQEVKCSFGEADARFSNVMKPSNHSLTFSSLQNSRPTWENKNMHDALALSMSLGTPSQNTVLPSVTEKEERRLILPKPLKTGLTTIQEKNNGIISEAQVPKPPTECSGKHQLLPRYWPRITDQELEKLSVDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISHSGGLPLPFQDVKGNEWTLHFRFWPNNNSRMYVLEGVTPFIQSMQLSAGDTVTFSRIDPGGKFVMGFRRASNSIHTQNASESAQSNDISTKETIPSPTQNPHTISNYPDLQSKKEIMEPHLNGHPEHLHLGTGSDKKCEDMTKNDLLEQPISASLKKRTRNIGPKNKRLLIHSEDAMGFRLTWEEAQDLLYPPPSVKPNIVTIEDQEIEEYHEPPVIGERTIFNACPSGSSCSTPEEHPDEVDNLLRTIKVSKKKHRRMEKSETIEEHEPSGLEALANAAVLGDILVDLAEPSSVVTTKHPRHRPGCTCIVCIQPPSGKGKHKPTCNCLACMTVKCRLETLTMRNKKRQSERNADVSASQKDQIQKRDETDANGALKGDPSQ 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0350 712 CDD B3_DNA 298 399 IPR003340 GO:0003677
Lal6g0350 712 Gene3D - 278 404 IPR015300 -
Lal6g0350 712 SUPERFAMILY DNA-binding pseudobarrel domain 298 400 IPR015300 -
Lal6g0350 712 SMART B3_2 300 401 IPR003340 GO:0003677
Lal6g0350 712 ProSiteProfiles B3 DNA-binding domain profile. 300 401 IPR003340 GO:0003677
Lal6g0350 712 MobiDBLite consensus disorder prediction 404 437 - -
Lal6g0350 712 MobiDBLite consensus disorder prediction 675 712 - -
Lal6g0350 712 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 560 705 - -
Lal6g0350 712 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 12 560 - -
Lal6g0350 712 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 560 705 - -
Lal6g0350 712 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 560 - -
Lal6g0350 712 Pfam B3 DNA binding domain 300 400 IPR003340 GO:0003677
Lal6g0350 712 MobiDBLite consensus disorder prediction 675 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0350 Lal-Chr6 2213676 2220066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0350 1 701 B3 DNA Binding Superfamily AT2G30470 44.764 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal6g0350 B3 1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0350 - - lang:109356710 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0350 6 2213676 2220066 Lal6g0350 6 2213676 2220066 ECH
Lal22g0318 22 2017991 2024359 Lal6g0350 6 2213676 2220066 LSH
Lal5g1264 5 15366268 15375048 Lal6g0350 6 2213676 2220066 PCT
Lal3g0463 3 3173838 3181383 Lal6g0350 6 2213676 2220066 PCT
Lal11g0574 11 4619315 4627443 Lal6g0350 6 2213676 2220066 PCT
Lal6g0350 6 2213676 2220066 Lal5g1264 5 15366268 15375048 PCT
Lal6g0350 6 2213676 2220066 Lal3g0463 3 3173838 3181383 PCT
Lal6g0350 6 2213676 2220066 Lal11g0574 11 4619315 4627443 PCT