Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0347 ATGTCCGTACAGTCAACACTGAAGTTCACTACATCAAGTTCAAATTTTGAGGGCAACCCATTATGCAAAACAATGAAGAAACCTCAAAGGAAGGTGGTTCGGATCATAGTGACTGACCACGATGCTACTGATTCAGAATCTTCAAGCGACGAAGAACAGAAAACGAAGCAAAAAAGAGTGAAGAGGGAAACCACACAGATCACTATGCACTTTCCCTTCTTTGATTCTCCTTCCTCTTCATGTTCTCGCTCTTGCTCTTCCTTTTCTTCTTCATCAGAACAGTGTTGTAAGAAGTACAACAGACCAAAGAAATCACCGTCCTTCACCGCCAGTGTCGGCATGCGCCACAGAAACAAGTTTCGTGGCGTTCGTCAACGGCCGTGGGGACGTTGGGCCGCTGAGATTCGTGACCCCAACCGTAGGAAACGGATCTGGCTTGGTACCTTTGACACGGCGGAGGAAGCTGCCACCGTGTACGACAAGGCGGCAATGAAACTGAAAGGATCCAACGCCATCACTAACTTCCCCGTTCCGGCGAATGAGAATGAAGTGATGACGCAGGCTACCGCCGGCGAAATTCAGAGTGTTGACGTCGGCTCCTCGTATTCAAACGCGGTGGCGTCACCTACTTCTGTTTTGCCTTTCCACGGTGATTCAACGCCGTTCGACGGTTTCAGTTACGGCGACGTGGATGCGTTTGGTTTCGACATCGACATGGCGTTAAGTCTGCCGGACGTTGACGTTATGCTGGCGTGTCAGCGGCTTGGGAAGGAGGAAGTGTTCGGTGAATTTGACCTTGACGAGTTTATGACATGGCCTTTATAA 825 0.497 MSVQSTLKFTTSSSNFEGNPLCKTMKKPQRKVVRIIVTDHDATDSESSSDEEQKTKQKRVKRETTQITMHFPFFDSPSSSCSRSCSSFSSSSEQCCKKYNRPKKSPSFTASVGMRHRNKFRGVRQRPWGRWAAEIRDPNRRKRIWLGTFDTAEEAATVYDKAAMKLKGSNAITNFPVPANENEVMTQATAGEIQSVDVGSSYSNAVASPTSVLPFHGDSTPFDGFSYGDVDAFGFDIDMALSLPDVDVMLACQRLGKEEVFGEFDLDEFMTWPL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0347 274 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Lal6g0347 274 MobiDBLite consensus disorder prediction 1 20 - -
Lal6g0347 274 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Lal6g0347 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 218 - -
Lal6g0347 274 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Lal6g0347 274 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Lal6g0347 274 MobiDBLite consensus disorder prediction 39 63 - -
Lal6g0347 274 PIRSF PTI6 1 274 IPR017392 GO:0003700
Lal6g0347 274 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Lal6g0347 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 20 218 - -
Lal6g0347 274 MobiDBLite consensus disorder prediction 1 22 - -
Lal6g0347 274 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Lal6g0347 274 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Lal6g0347 274 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0347 Lal-Chr6 2189643 2190467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0347 23 216 AP2-EREBP Transcription Factor Family AT4G27950 45.685 3.57e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal6g0347 AP2 1.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0347 6 2189643 2190467 Lal6g0347 6 2189643 2190467 ECH
Lal18g1282 18 15427514 15428353 Lal6g0347 6 2189643 2190467 LSH