Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0327 ATGTCACTCTCTCTGTTCACACTTACCATTCTCTTGTTCACACTCTCTTCAATCGTCACCTCTCACTCCTCTTCTTCTTCCTCCTCATATTCCCAACCTCAACCTTCTTCTTCCTCTCCTTTGATCTCCGAATGGCAATCCGCACATGCCACCTACTACGCCGCCTCCGATCCACGTGACGCTGTCGGTGGCGCGTGCGGATACGGCGATTTGATCAAGGTCGGTTACGGCCAGGCCACTGTAGGGTTGAGTGAGGTACTGTATGAGCGTGGCCAGATCTGTGGCGCGTGTTTCGAGGTGCGTTGTGTTGATGACCTAAAGTGGTGTATACCTGGAACCTCCATCATTGTTACCGCCACTAATTTCTGTGCTCCAAACTATGGCTTCACATCTGAGGGTGGTGGACACTGTAATCCTCCAAATAAACACTTCGTTCTACCGATTGAGGTTTTTGAGAAGATCGCTATCTGGAAGGCTGGGAACATGCCAGTGCAGTATCGCAGGGCGCAGAAATTTCAACGCAGTTATTATAAAGCTACAGATACTGTTACTTGCTCAGTTCAAAGCCAACATCACTCTAAAGGGATAAATTGCAGAAGGGAAGGAGGTATCCGATTTACAGTCACTGGTTCTGGTATTTTCATTTCAGTCCTGATCAGCAATGTTGCTGGCCATGGAGACCTAATAGCTGTTAAGGTTAAGGGCTCAAGAACTGGTTGGCTTCCAATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCTTTACTTCAAAACCAACCTCTTTCATTTGAGATTACGAGTAGTGATGGGAAAACAGTTACATCTTACAATGTTGCTCCCAAGGATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAATTTGATACTTAA 894 0.4653 MSLSLFTLTILLFTLSSIVTSHSSSSSSSYSQPQPSSSSPLISEWQSAHATYYAASDPRDAVGGACGYGDLIKVGYGQATVGLSEVLYERGQICGACFEVRCVDDLKWCIPGTSIIVTATNFCAPNYGFTSEGGGHCNPPNKHFVLPIEVFEKIAIWKAGNMPVQYRRAQKFQRSYYKATDTVTCSVQSQHHSKGINCRREGGIRFTVTGSGIFISVLISNVAGHGDLIAVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEITSSDGKTVTSYNVAPKDWSFGQTFEGKQFDT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0327 297 PANTHER EXPANSIN-A13 13 170 - -
Lal6g0327 297 PANTHER EXPANSIN-A13 194 296 - -
Lal6g0327 297 PRINTS Expansin signature 75 89 IPR002963 GO:0009664
Lal6g0327 297 PRINTS Expansin signature 102 113 IPR002963 GO:0009664
Lal6g0327 297 PRINTS Expansin signature 115 125 IPR002963 GO:0009664
Lal6g0327 297 PRINTS Expansin signature 134 151 IPR002963 GO:0009664
Lal6g0327 297 PRINTS Expansin signature 151 164 IPR002963 GO:0009664
Lal6g0327 297 Gene3D - 201 295 IPR036749 -
Lal6g0327 297 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Lal6g0327 297 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Lal6g0327 297 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Lal6g0327 297 PRINTS Expansin/Lol pI family signature 278 292 IPR007118 GO:0005576
Lal6g0327 297 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 213 292 IPR007117 -
Lal6g0327 297 SUPERFAMILY PHL pollen allergen 200 292 IPR036749 -
Lal6g0327 297 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 176 IPR007112 -
Lal6g0327 297 SUPERFAMILY Barwin-like endoglucanases 38 169 IPR036908 -
Lal6g0327 297 Gene3D - 29 170 IPR036908 -
Lal6g0327 297 Pfam Expansin C-terminal domain 204 281 IPR007117 -
Lal6g0327 297 PANTHER EXPANSIN-A15 194 296 IPR002963 GO:0009664
Lal6g0327 297 PANTHER EXPANSIN-A15 13 170 IPR002963 GO:0009664
Lal6g0327 297 SMART dpbb_1 80 166 IPR007112 -
Lal6g0327 297 Pfam Lytic transglycolase 81 166 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0327 Lal-Chr6 2098537 2100524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0327 44 297 Expansin Gene Family AT3G03220 74.016 2.47e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0327 - - gmx:100809568 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1223 5 15002242 15005273 Lal6g0327 6 2098537 2100524 PCT
Lal6g0327 6 2098537 2100524 Lal5g1223 5 15002242 15005273 PCT