Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0320 ATGCCAACAACAGCAGCACCTGATCTTTCCCTTCACATAAGCCTCCCAATCACCTCATCCTCTTGCAATAACATTACTGCTACAACTCTACCTAACAATTATGAAGCCCTTTCCACCACAACTGTCTCTCAAGCCCACACAGAACTCTCTCTTGGAAGAGGTTTCTCACCTACACAGGAAACACCACAAAACCCTTATTACCAAACCCAAACTTACGATTTCCATCATCTTCACCACAACCACTACAATAATAGTACTAGAAGTACTACTTCTACAAGTACTACTGCTGCTGCTGCTACTAATAATACTACTCCATTGAATCATACAAACTATGATGTACCATTAGATGGTTTGAGACCAATCAAGGGGATTCCGGTGTATCACAACCGCTCATTTCCTTTCTTGCCTTTGGACCACTCAAGAGATCATCATCAGAAGGACCATCTTCATCATCATCAACAACAACAACACAATATGTGCTTATATCATCATGTCCCTTCTTTGTCCTCTTCTTGTTCCTCGCGTTCGCCCTACTTGGCGGGAACAAGTTTGGATCCCATGTCTATAAGGGCAGCAGCAACTGCTGCTACAAGGTTTAATGTGATTTGTGGTGATGATGTTTTCAGTTCTCTTCCATCATTGCACCATCATCACTCACAGTTTGGGGTTAACACTTCTGAGCCTTCTCCTGGGATGGTAAGATCGAGGTTTTTGCCTAAGCTTCCTATCAAGAGGAGCATGAGAGCACCAAGAATGAGATGGACAAGCACCCTCCATGCTCGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTGAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCTGTTTCTTTAGGCCATTCAAATGGATCCGGAGAGGATGACATGTCTCCAATTGGCAGCAGCCATGACCGTGATCGACTAGGTCAATTTACCGACCAAAGAGGGTGGCCAGATCAGCCAGTTCAACAAGATATGGACTACACTTCCACCATTGCTACTCTATGGAGTAACTCCTCAAGTAGAGGGCCATGGCTACAAACTAATTCTAATGACATAAATGGTACCGGAGGTCTCCAAATTCAGGAGTGTGATTCAACCAAAACGAGGAGCAGTTTGCAAAGTTCTAATTTGGAGTGCAAGATTAACCCAAGCTTGGAGTTCACATTAGGAAGACCAGATTGGAATGGCAAACAAAAAGCATAG 1293 0.4385 MPTTAAPDLSLHISLPITSSSCNNITATTLPNNYEALSTTTVSQAHTELSLGRGFSPTQETPQNPYYQTQTYDFHHLHHNHYNNSTRSTTSTSTTAAAATNNTTPLNHTNYDVPLDGLRPIKGIPVYHNRSFPFLPLDHSRDHHQKDHLHHHQQQQHNMCLYHHVPSLSSSCSSRSPYLAGTSLDPMSIRAAATAATRFNVICGDDVFSSLPSLHHHHSQFGVNTSEPSPGMVRSRFLPKLPIKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAVSLGHSNGSGEDDMSPIGSSHDRDRLGQFTDQRGWPDQPVQQDMDYTSTIATLWSNSSSRGPWLQTNSNDINGTGGLQIQECDSTKTRSSLQSSNLECKINPSLEFTLGRPDWNGKQKA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0320 430 Gene3D - 249 306 - -
Lal6g0320 430 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 430 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lal6g0320 430 MobiDBLite consensus disorder prediction 84 107 - -
Lal6g0320 430 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 250 303 IPR006447 GO:0003677
Lal6g0320 430 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 5 430 - -
Lal6g0320 430 SUPERFAMILY Homeodomain-like 247 303 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0320 Lal-Chr6 2047733 2052949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0320 7 427 G2-like Transcription Factor Family AT5G16560 41.518 9.13e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal6g0320 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0320 - - lang:109359351 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0294 22 1858364 1864015 Lal6g0320 6 2047733 2052949 LSH
Lal3g0510 3 3710986 3717067 Lal6g0320 6 2047733 2052949 PCT
Lal5g1215 5 14880948 14886814 Lal6g0320 6 2047733 2052949 PCT
Lal6g0320 6 2047733 2052949 Lal3g0510 3 3710986 3717067 PCT
Lal6g0320 6 2047733 2052949 Lal5g1215 5 14880948 14886814 PCT