Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0318 ATGAGAGGCTTCCAACTTAAGCACGGCTTAATCATGAAACCGAAGTTTGATCTTGAACTGAAGGCTTCTGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTATCTATCCAAGAAACATCTGGAGGTCCTTTTAGTGACAACCTCATCAACTCTACCAATGTCTCAAATCCAATAGGGACTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAATTAGGGGCAATAGATTCAATCGGATTCTCATTCTCAAGCACTAGTGAGAGCTGCAATGAACCTGCATCTCAAACTACAGCAGCAACCACACCACGAGTTTACTCTTGCAACTACTGTCAGCGCAAGTTTTTAAGCTCTCAGGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAAAGAACACTAGCAAAAAGGGCTATGAGAATGGGTTTTTATTCTGAGAGGTATGCTAGTCTAGCTTCTCTCCCTCTGCATGGTTCTTTCAGGACCTTGGGGATAAAGGCACACTCTTCAATGCACTATGGTTTGTCACCAACAATAAGGCCTACTGCTGAGGTAAAAAACAATGTAAGATTTGAACAAGGATATGCTGGTCTTCCAATATTCTTGGAGGATGATGAGCCGAAACTGTTGTGGCCTGGTAGTTTCCGTCCAGTTGCAGAAGTAGGTGATACTCATCAGAATTTCATACCAACTGGAAGTTCAGATTTTACTTTTACTGAGGTGAATCCACCAGTAGAGATAGAGAACAAAACACCAGATTTGACATTGAAACTTTGA 810 0.4185 MRGFQLKHGLIMKPKFDLELKASAEYESEVSSQVASNVSIQETSGGPFSDNLINSTNVSNPIGTHPNSDAISLDLTLNFKNSELGAIDSIGFSFSSTSESCNEPASQTTAATTPRVYSCNYCQRKFLSSQALGGHQNAHKRERTLAKRAMRMGFYSERYASLASLPLHGSFRTLGIKAHSSMHYGLSPTIRPTAEVKNNVRFEQGYAGLPIFLEDDEPKLLWPGSFRPVAEVGDTHQNFIPTGSSDFTFTEVNPPVEIENKTPDLTLKL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0318 269 PANTHER ZINC FINGER PROTEIN 3-RELATED 12 269 - -
Lal6g0318 269 SUPERFAMILY beta-beta-alpha zinc fingers 113 144 IPR036236 -
Lal6g0318 269 Gene3D Classic Zinc Finger 96 163 - -
Lal6g0318 269 PANTHER ZINC FINGER PROTEIN JAGGED 12 269 IPR045320 GO:0003700
Lal6g0318 269 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Lal6g0318 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0318 Lal-Chr6 2037300 2039071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0318 111 269 C2H2 Transcription Factor Family AT1G66140 48.901 2.10e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0318 - - gmx:100794851 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1208 5 14853065 14853808 Lal6g0318 6 2037300 2039071 PCT
Lal6g0318 6 2037300 2039071 Lal5g1208 5 14853065 14853808 PCT