Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0315 ATGGTTCTGTCTTGGACTAAAGGAAGAGTTTTTCGCCGTTCCCGTAAAGGGAAAGAGTTAAATTCCGTTGGTAATTTGGAGGTGGAGATTGCTATACCAACTCATTTTCGATGTCCGGTCACACTAGACATGATGAAGGACCCTGTGACACTGTCCACAGGGATAACCTACGATCGCGAGAGCATTGAGAAATGGTTCGAAGAAGGGAACAAGACATGCCTGGTAACAAAGAGAGTTCTCACAAACTTTGACATGATTCCAAATCATGCATTAAGGAAGGTGATTCAAGATTGGTGTGTAGAACATCGTTCTTTTGGGATTGAAAGGATCCCAACTCCTCGTATACCCGTGACACCGTACGAGGTTGAAAACACGAGTACTAGGATCACGTCTTGTGCACAACATGGTGATGTAAACAAGTGTTTGGAATTGGTGAGGAAGATCAAGGCATGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTGACAACGGGTGCTTCTCTTGTTCTTGTTAAGGTCTTTGAGTTTTTCTCATCACGTGGTGGATCCATTGAGAACAACAACATTAGTGTCTTGGAAGAGATTTTGGGTGTCCTGACATGGATGCGCCCTCTTTCACAAGAAGGTAAATCAATTTTAGGGTCATTGAGTTCTATGAGTTGCATGGTTTGGGTCCTAAATGGTAAAGACCTTTCTTCAAGACAGAATGCTGCTTTGTTGCTCAAAGAAGTGCCCCTTGAGGCATTGGAAAAAACTGAAGGAGTTTGTGAAGGTTTGGTTAAGACGATTGGAAAGCCGGTTGGGCATGCTGCTGCTACCAAAGCATGCTTGTCAATAATTTTCAACATGGTTTCTTCATCTAAGAATAGAGAGGTAATAGCACAAAGATTTTTGGAATTGGGTTTGATTTCAGTTTTGTTGGAGACCCTTGTTGATGCTGAAAGAGGGGCATGTGAGTTGGCCTTGGGGGTGCTAGATTGCATTTGTGATTACAAACAAGGAAAAGAGATGGCCAAGGCAAATGCTTTGACTCTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAGTTGAGTTCTAGTTTTGCAGTTTCTATTGTTTGGAAGCTTTGTGACAAGACAGAAGAAGGGTTGTTGATTGAGGCACTTCAAGTTGGAGTGTTTCAGAAACTACTGGTTCTGCTGCAGGTGGGTTGTGGTGAGAGCACAAAGGAGAAGGCTTCTGAGTTGTTGAAATTTTTGAATGGTTATAGGAGCAAAGCGGAATGTGTTGATTCTTCATCATTGGATTTCAAGAACCTTAAGAAGCCCTTCTAA 1320 0.428 MVLSWTKGRVFRRSRKGKELNSVGNLEVEIAIPTHFRCPVTLDMMKDPVTLSTGITYDRESIEKWFEEGNKTCLVTKRVLTNFDMIPNHALRKVIQDWCVEHRSFGIERIPTPRIPVTPYEVENTSTRITSCAQHGDVNKCLELVRKIKAWGKESERNKRCIVTTGASLVLVKVFEFFSSRGGSIENNNISVLEEILGVLTWMRPLSQEGKSILGSLSSMSCMVWVLNGKDLSSRQNAALLLKEVPLEALEKTEGVCEGLVKTIGKPVGHAAATKACLSIIFNMVSSSKNREVIAQRFLELGLISVLLETLVDAERGACELALGVLDCICDYKQGKEMAKANALTLPLVIKKLLRVSELSSSFAVSIVWKLCDKTEEGLLIEALQVGVFQKLLVLLQVGCGESTKEKASELLKFLNGYRSKAECVDSSSLDFKNLKKPF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0315 439 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Lal6g0315 439 Gene3D - 127 423 IPR011989 -
Lal6g0315 439 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lal6g0315 439 CDD RING-Ubox_PUB 36 77 IPR045210 -
Lal6g0315 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 439 - -
Lal6g0315 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 107 IPR013083 -
Lal6g0315 439 PANTHER WDSAM1 PROTEIN 9 439 IPR045185 GO:0061630
Lal6g0315 439 SUPERFAMILY RING/U-box 29 107 - -
Lal6g0315 439 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Lal6g0315 439 SUPERFAMILY ARM repeat 132 412 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0315 Lal-Chr6 2025616 2026935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0315 27 439 U-box Gene Family AT5G37490 45.476 4.12e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0315 - - gmx:100795913 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0291 22 1845156 1846478 Lal6g0315 6 2025616 2026935 LSH