Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0313 ATGATGAGTGCTTCTTTGTCCACCAATGAGAACAAGGCCGAGAAGGTTGACAATTGCAAAGCCCAAGAGCAAAGGTGGCTTGATGTTTTTTTGGGGGAAACTTTCTTTGGCTCCTGTGCAACTCATCCATTTCGTCGGAATGAGCTAAATAAGTACTGCATAAATTGCAATGTATCAGCTTGCGAGTACTGTATTTCGTCTGGTGCTCATCGCCATCACAATATTCTGAAAATCTATAGACATATTCACAAAGTAGTTGTCTCCCTAGGTGCTATGGAAAAGCGTATTGACTGCTCAAAAATTCAGCCTTATAAATGCAATAAGCGAGCGGTTATATCTATATATCCTCTGCCATCCTATGGTGTAGCACCAAATGTTGAGGCATCATGCAAAAGTTGCAGTTGGAAGTTGACTGAACCCAATTTATATAGCTATTGCTCCATTTCTTGTAAGGTCAAGTCAGTCTTAAGAAATCCTGATGATTCTGATCCTGCCTGTCCTCATCAAGAGAGTCAGGTAAAGATAAGGCAAGGGGGAACTTTTGAACCCCAAAAGCCGATGGAGGAGATGCAGAAAGAAATCGTTAACCCTGTGTCATTTCGTAAAAGAAAGAGAAAGGGAACACCCCATAGGGCTCCTTTCTTCTAA 648 0.4167 MMSASLSTNENKAEKVDNCKAQEQRWLDVFLGETFFGSCATHPFRRNELNKYCINCNVSACEYCISSGAHRHHNILKIYRHIHKVVVSLGAMEKRIDCSKIQPYKCNKRAVISIYPLPSYGVAPNVEASCKSCSWKLTEPNLYSYCSISCKVKSVLRNPDDSDPACPHQESQVKIRQGGTFEPQKPMEEMQKEIVNPVSFRKRKRKGTPHRAPFF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0313 215 Pfam B-box zinc finger 38 78 IPR000315 GO:0008270
Lal6g0313 215 ProSiteProfiles Zinc finger B-box type profile. 39 78 IPR000315 GO:0008270
Lal6g0313 215 CDD Bbox2 39 78 - -
Lal6g0313 215 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 215 - -
Lal6g0313 215 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 215 - -
Lal6g0313 215 Gene3D Classic Zinc Finger 36 78 - -
Lal6g0313 215 MobiDBLite consensus disorder prediction 161 188 - -
Lal6g0313 215 Pfam PLATZ transcription factor 80 152 IPR006734 -
Lal6g0313 215 SUPERFAMILY B-box zinc-binding domain 39 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0313 Lal-Chr6 2012426 2021537 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lal6g0313 PLATZ 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0313 - - lang:109355923 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0289 22 1837454 1838573 Lal6g0313 6 2012426 2021537 LSH