Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0312 ATGTCTTTCTCTCTCACCGAAACTTGTAAGAAGCGAAAACGAAACCCAAAAGTTTTCAGGTTCAACTCTTTTGGTGACCCTGGTTCTCCTATCACTCCCTCTGGTCCTTTCCGCCAAAACGTTCGATTCTTTATTCAAGAATGTGGTGATCTTGAAGAATACAATGTTCTTGGTAACCCCTTATGGTGCACTCTTCTTGTTCACAACAAGACTAACCTCATGACTCCTCTCTACACTCTTGAAGAAGATGTCTACCAGTCTTCTCACCCTTTCTGTGATTATTGCCGCTCTGCTGGTTGGAGTGGACATTTTGTAACAAAGAGAAGATACCATTTCATAATCCCAATGGACAGTGGGTGGCATAAACACTTAGATGACGGTGCTTTTGATAATCAGAGTCATCTCTTGCATGGAGTGATTCACTGCAATGGCTGTGGCCATTTGATTTGCATTAATGGCTATGAAGGGGGATCCAAAGTCCTCAGTGGTAGAGAAATCATGGATCTATGGGACAGAATCTGCACGAACCTTAAAGCAAGGAGAATTTCAGTAGAAGATGTTTCAAGGAAGAGGTGTATGGATCTTCGCCTTCTTCATGGAGTTGCTTATGGCCACTCTTGGTTTGGTAGGTGGGGTTATAGATTCTGTCGTGGAAGCTTTGGGGTTACAGAGAAAAACTACTATGAAGCAATAGAATCTCTTGGTTCTTTGGAGCTTGATGAGATTGTCAGAGATTTGGGTAAAACAAAGTGCCATAAGGAAATTAAACAAATGGTTCGGTGCTATAGAGATATGAGTGAAACTAAGATTGCCACTATCAGGGATCTTCTCAGGTTCATGCTTACTGTTAAGCCTCGTGCTCCTGTGACTAAGACGAGTTCTGTTCCTTCTTCAGGTTTCAACTCAAGAAATTCAACCAGACATGCACTCTCAAATAGAACAGATATAATAAAGGAGAAATTTGTGAGGTACAAGAAGTTCAGCACTGTAGTGGCTAACATGGATATCAGGTGGCCTAAAAGGAGATTAGAATTTGCAGCTCAAGTGATTGTAGATGCATTGAATGAGCACAGGGGTGTGAAATCAGGTTCTGGTGGAATGACAAGGCAAGATGTTAGAGATGCAGCTAGGCTTCACATTGGTGACACGGGCTTACTTGATTATGTGCTGAAATCACTGAACAATGTGATTGTTGGAGATTATGTGGTTCGTCGCATGGTGAATTCTAGGACTAGGATCCTTGAATATACCATTCATGAGCATGACAATTGGATTAAAGAACCTGAAATGGAGCCCGAGGCAATGGTTCATGTAGATCTCAAAGAAGAATCATCTAGGATGCCTGGTAACGATGTTAATAGAGATGTACTTTATGTGTATAAGAATGTGATATTAGGGTATCCAGATTCAGAACAAATGGAGTTGGGAGTTCAGACAATTCTTGACAGCAGGCACTTTGTGAAGGAGTTTGAACTAACGGATGAAATGGAGCAGGTATTGACATTCATATGCAAGTTGAAACCAAGTGTTGCTGAGGCTAAATATGAGTTGAGAGATCCAGGTTGTGGTGTGATTGTTATGGTTCCATTGCATGCAACTATTGGAGACTTGAAGAAAGCTTCTGAGGATGCACTGAGAGACACTTACTGCATAGCAGAAAGGCTTGTAGTGATAGGTTTTGCAGAATTGATGGGAGTGGGTGATGAGGAAGTGCTTTTTGGGCTAATCCAATCAGGTGTTGAACTTTGTGTGAGTGGAATTGCTATTGATTTGTGCACTCCATTGAAGTATCAGGGTGGGACAGATAATTGGAAGGTGAGGTGTGAATGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAGGTGTGGCAGCATACAAGATGCTGCGGCATTGATGATTCTGAGACAGTGCCGCCACTGTTTGTGTGCACTGGATGTTGTGATTCACTTGCACCTGCGAGAATTGAATCTGCATTTGATATGGATTGTGTTGATACTTATCTGATTTCTTCAGAGCCAACACCCTTACTGGAGTATGAATATGGCTACTGA 2070 0.4213 MSFSLTETCKKRKRNPKVFRFNSFGDPGSPITPSGPFRQNVRFFIQECGDLEEYNVLGNPLWCTLLVHNKTNLMTPLYTLEEDVYQSSHPFCDYCRSAGWSGHFVTKRRYHFIIPMDSGWHKHLDDGAFDNQSHLLHGVIHCNGCGHLICINGYEGGSKVLSGREIMDLWDRICTNLKARRISVEDVSRKRCMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEKNYYEAIESLGSLELDEIVRDLGKTKCHKEIKQMVRCYRDMSETKIATIRDLLRFMLTVKPRAPVTKTSSVPSSGFNSRNSTRHALSNRTDIIKEKFVRYKKFSTVVANMDIRWPKRRLEFAAQVIVDALNEHRGVKSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGDYVVRRMVNSRTRILEYTIHEHDNWIKEPEMEPEAMVHVDLKEESSRMPGNDVNRDVLYVYKNVILGYPDSEQMELGVQTILDSRHFVKEFELTDEMEQVLTFICKLKPSVAEAKYELRDPGCGVIVMVPLHATIGDLKKASEDALRDTYCIAERLVVIGFAELMGVGDEEVLFGLIQSGVELCVSGIAIDLCTPLKYQGGTDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLAPARIESAFDMDCVDTYLISSEPTPLLEYEYGY 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0312 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 660 - -
Lal6g0312 689 CDD PHD_MMD1_like 608 652 - -
Lal6g0312 689 SUPERFAMILY FYVE/PHD zinc finger 599 656 IPR011011 -
Lal6g0312 689 SMART PHD_3 607 653 IPR001965 -
Lal6g0312 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 657 IPR013083 -
Lal6g0312 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 660 - -
Lal6g0312 689 ProSitePatterns Zinc finger PHD-type signature. 608 652 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0312 Lal-Chr6 2008446 2011736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0312 10 658 PHD Transcription Factor Family AT5G22260 33.333 1.88e-116 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0312 - - mtr:MTR_5g077750 1022.69