Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0304 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGATGAAGACAAGAAGCTTATCAACTTCATTCTTACCAATGGCCAATGTTGCTGGAGAGCTGTGCCTAAGCTAGCAGGTCTGTTAAGGTGTGGGAAGAGTTGCAGACTGAGGTGGATAAACTATCTGAGACCAGACTTAAAGAGAGGACTACTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTAAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCCGGAAGAACCGATAATGAGATCAAAAACCATTGGAATACACATATAAAGAAAAAGCTCAAGAAAATTGGCATTGATCCTATCACTCACAAACCACTCTCTAATACTGCAACTGACCAAACCCAAGATCAAACTAAACAACAACTAAACCAACCACTAGAAGAATCATTCCAAGTTGACTTTGACCCAATATTTGAACCTGAAATTGACCAAAATAATGAGCCAGCGATACATGAGACTTCAATTGACTTAGACCCCAAGATTGTAACACCACTATTTGACACAATGGATGATGTAATGAATGGGTTTTGCACTGATGAAGTTCCAATAATTGAACCCCATGAGATACTAGTTCCATGTGTTCCTTCCTCTTCATCAACTTCCATATCATCTTCTTCAAATTCAACAAAATTCCTTGAAGACCTTCAGCTCCCAGATTTTGAGTGGTCTTGTGATTACAATGATGGTAGTGTTGTTAACAATAATAGTGATGCCAATGATAACAACATTATGGATTTATGGGATAATGATGACTTTATTAGCAGTTTGAATTTGCTGATTAATGATGTTGGTGATGATGAAAAACAAGTGTTTGATGCTACCGATGGTTCTCATTGTCAGTACCAGAAAACGGTCATGGAATTAGAATCTTGGGCATTTGGGTTGTTTTGA 960 0.3854 MGRQPCCDKVGLKKGPWTADEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGLLSEYEEKMVIDLHAKLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKIGIDPITHKPLSNTATDQTQDQTKQQLNQPLEESFQVDFDPIFEPEIDQNNEPAIHETSIDLDPKIVTPLFDTMDDVMNGFCTDEVPIIEPHEILVPCVPSSSSTSISSSSNSTKFLEDLQLPDFEWSCDYNDGSVVNNNSDANDNNIMDLWDNDDFISSLNLLINDVGDDEKQVFDATDGSHCQYQKTVMELESWAFGLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0304 319 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 279 - -
Lal6g0304 319 PANTHER MYB TRANSCRIPTION FACTOR 1 279 - -
Lal6g0304 319 CDD SANT 16 61 IPR001005 -
Lal6g0304 319 SMART sant 66 114 IPR001005 -
Lal6g0304 319 SMART sant 13 63 IPR001005 -
Lal6g0304 319 CDD SANT 74 111 IPR001005 -
Lal6g0304 319 Gene3D - 70 148 - -
Lal6g0304 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal6g0304 319 Gene3D - 11 67 - -
Lal6g0304 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal6g0304 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal6g0304 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal6g0304 319 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lal6g0304 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal6g0304 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0304 Lal-Chr6 1949834 1952098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0304 1 285 MYB Transcription Factor Family AT1G66230 59.247 2.91e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal6g0304 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0304 K09422 - gmx:100800494 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0304 6 1949834 1952098 Lal3g0525 3 3841594 3843790 PCT
Lal6g0304 6 1949834 1952098 Lal5g1197 5 14745647 14748617 PCT