Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0301 ATGACAAGGGGGCAACTTCAAAATATGTCAGTAAACAAGCACATACATACCATGTCATCGATCCGAGGGACCTTCTTCCCAATGAAACCTCAACCGTTCAATAAATATCCATTTGCCTTAGCCCTTAAAGCTTCTTCATCACCTGCACCTACAATGGCCACTGAAGAGGTTAATAAACCTCTCTCACTTCCTCCTTACCCTGAGATGATAATGAAAGCAGTTGAGGCACTGAATGAACCAAATGGATCTAACAAATCAGCCATAGCAAGTTACATAGAATCAACCTATGGTGTGCTTCCAGCAGGGCACACACCACTTCTCAATCATCATCTCCACAAGATGAAAGAAAGTGGTGAGCTTGTGTTTTTGAAGAACAACTACATGAAACCTGATCCTAATGCCCCACCAAGGAGAGGCCGTGGTAGACCACCAAAACCAAAGGCTGATGTGCCTTCTGGCACTACTGTGTCCTCACCAAGGCCAAGGGGTCGTCCTCCTAAGGACCCTAATGCTCCACCAAGTGCTAAGGTGGTATCAAGTGGAAGTGGTAGGCCAAGAGGAAGGCCTAAGAAGATTGCTCGCACTGCGCCACCACCACCACCACCACCACCTGTGGCTGCTGCTGCACCTGTTAGTAGTGGAAGACCAAGGGGTAGGCCTCCTAAGGTGAAGCCTCAATTGACAGAAGTTAGTGTTGAATCATAG 705 0.4752 MTRGQLQNMSVNKHIHTMSSIRGTFFPMKPQPFNKYPFALALKASSSPAPTMATEEVNKPLSLPPYPEMIMKAVEALNEPNGSNKSAIASYIESTYGVLPAGHTPLLNHHLHKMKESGELVFLKNNYMKPDPNAPPRRGRGRPPKPKADVPSGTTVSSPRPRGRPPKDPNAPPSAKVVSSGSGRPRGRPKKIARTAPPPPPPPPVAAAAPVSSGRPRGRPPKVKPQLTEVSVES 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0301 234 PRINTS AT-hook-like domain signature 137 147 IPR017956 GO:0003677
Lal6g0301 234 PRINTS AT-hook-like domain signature 157 168 IPR017956 GO:0003677
Lal6g0301 234 PRINTS AT-hook-like domain signature 181 191 IPR017956 GO:0003677
Lal6g0301 234 Pfam linker histone H1 and H5 family 64 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal6g0301 234 MobiDBLite consensus disorder prediction 126 234 - -
Lal6g0301 234 PANTHER HMG-Y-RELATED PROTEIN A 52 230 IPR031059 GO:0003677|GO:0005634
Lal6g0301 234 Gene3D - 58 163 IPR036388 -
Lal6g0301 234 SUPERFAMILY "Winged helix" DNA-binding domain 59 138 IPR036390 -
Lal6g0301 234 MobiDBLite consensus disorder prediction 192 209 - -
Lal6g0301 234 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 62 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal6g0301 234 SMART h15plus2 60 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal6g0301 234 Pfam AT hook motif 214 225 IPR017956 GO:0003677
Lal6g0301 234 Pfam AT hook motif 138 145 IPR017956 GO:0003677
Lal6g0301 234 Pfam AT hook motif 183 193 IPR017956 GO:0003677
Lal6g0301 234 Pfam AT hook motif 159 170 IPR017956 GO:0003677
Lal6g0301 234 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Lal6g0301 234 SMART AT_hook_2 214 226 IPR017956 GO:0003677
Lal6g0301 234 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Lal6g0301 234 SMART AT_hook_2 183 195 IPR017956 GO:0003677
Lal6g0301 234 PRINTS High mobility group protein (HMGY) signature 135 147 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lal6g0301 234 PRINTS High mobility group protein (HMGY) signature 159 170 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lal6g0301 234 PRINTS High mobility group protein (HMGY) signature 172 191 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lal6g0301 234 PANTHER HISTONE H1 52 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0301 Lal-Chr6 1931955 1933559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0301 69 151 Single Myb Histone (SMH) Gene Family AT1G49950 34.737 2.93e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0301 - - gmx:100793697 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0279 22 1770851 1772211 Lal6g0301 6 1931955 1933559 LSH