Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0284 ATGCGTAGGAACAGTCCAGGGTACTACAGTCCTCCAAGGAGAGGATACGGCGGTAGAGGGAGATCACCACCACCGCCGTCACCTCCTTATAGGAGAGGACACGGCGGTGGAGGAGGCAGACGCAGGGAAAGCAACAATGGAAGCCTTCTCGTCAGGAACATTCCTCTGGATTGCCGACCTGAGGAACTTCGGATCCCGTTTGAACGATTCGGTCCGGTTCGTGATGTCTACATTCCAAAGGATTATTACTCAGGACAACCCCGAGGATTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACGGACAAATTTTTGCTGGAAGAGAAGTAACCGTAGTTGTGGCTGCAGAGACAAGAAAGAGGCCAGAGGAGATGCGCCACAGGACTAGTAGGTTCAGAGGACCGGGGAGCTATGGGGGGCGAAGGTCTTCACCTTATGGGCGTTTTCGATCTCGCTCAATTTCCAGATCTCGCTCACGCTCACCACCTTATCACTCTGGTTCCAGAAATCGATATCATTCAAGGTCCTATTCTCCTGCCCCAAGACGGCAAAGTCACTACTCTGTTTCCCCTAGAAGGCCAGCGGAGCATCCTAGATCACCAAGAAGTCCTCTTGGGGAGCGAGATGGTGACCCAAAGCGCAGGTCATATTCTCCTGGGGAGCGAGATGGTGGTCATAATCGCAGGTCATATTCTCCAGCTTATGGTAATGGTGCTGATCAGAATCCAAGATATGCTGAGAACTCTATATACAAGTCCGAGGCCGATGGAGGACAGTGGAAATCACATAGAGCATCAAGATCACCAGCTGGATCTAGATCAAGGTCTCCACTCGATTTGTCACCCAGACATGAAAGATGA 885 0.5096 MRRNSPGYYSPPRRGYGGRGRSPPPPSPPYRRGHGGGGGRRRESNNGSLLVRNIPLDCRPEELRIPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDPYDASEAQYHMNGQIFAGREVTVVVAAETRKRPEEMRHRTSRFRGPGSYGGRRSSPYGRFRSRSISRSRSRSPPYHSGSRNRYHSRSYSPAPRRQSHYSVSPRRPAEHPRSPRSPLGERDGDPKRRSYSPGERDGGHNRRSYSPAYGNGADQNPRYAENSIYKSEADGGQWKSHRASRSPAGSRSRSPLDLSPRHER 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0284 294 MobiDBLite consensus disorder prediction 128 294 - -
Lal6g0284 294 SMART rrm1_1 48 121 IPR000504 GO:0003723
Lal6g0284 294 PANTHER OS02G0252100 PROTEIN 23 284 - -
Lal6g0284 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Lal6g0284 294 MobiDBLite consensus disorder prediction 156 193 - -
Lal6g0284 294 Gene3D - 40 161 IPR012677 -
Lal6g0284 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Lal6g0284 294 MobiDBLite consensus disorder prediction 242 256 - -
Lal6g0284 294 MobiDBLite consensus disorder prediction 197 236 - -
Lal6g0284 294 MobiDBLite consensus disorder prediction 1 48 - -
Lal6g0284 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 284 - -
Lal6g0284 294 SUPERFAMILY RNA-binding domain, RBD 43 152 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0284 Lal-Chr6 1860186 1864674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0284 51 141 Eukaryotic Initiation Factors Gene Family AT1G71770 37.113 4.85e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0284 K12900 - gmx:100804294 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0284 6 1860186 1864674 Lal6g0284 6 1860186 1864674 ECH
Lal18g1322 18 15690812 15695060 Lal6g0284 6 1860186 1864674 LSH
Lal22g0274 22 1748124 1751551 Lal6g0284 6 1860186 1864674 LSH