Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0282 ATGGCTGTAGTCCACATCATCACCATTGTTTCCTTCCTGGCTCTCCTAACATCCACCCAAGCCAAAATCCCCGGTGTCTACTCCGGCGGCGCGTGGCAAACCGCTCACGCCACTTTCTACGGTGGCAGCGACGCTTCTGGAACCATGGGAGGGGCATGTGGGTACGGGAACTTGTACAGCCAAGGGTATGGAGTAAGCACTGCAGCATTGAGCACTGCTTTGTTCAACAATGGTCTAAGCTGTGGCGCGTGTTTTGAGATAAAGTGTGCTAATGATCCTAGTTGGTGCCATCCCGGTAGTCCTTCAATTTTTATCACTGCCACTAATTTCTGTCCTCCAAACTATGCTCTTCCAAGTGACAATGGTGGTTGGTGTAACCCTCCTAGGCCTCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATTGCTCAGTACCGCGCCGGCATAGTTCCCGTCAATTACCGCCGGGTGCCATGCCGAAAACAGGGTGGGATAAGGTTCACAATCAACGGTTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTGGGAGGTGCAGGGGATATCATGAGGGTGAGTGTGAAAGGTTCAAAGAGTGGGTGGATGAGTATGAGTCGCAATTGGGGTCAGAATTGGCAATCAAACTCTGTTTTGGTTGGTCAGTCACTTTCATTTAGGGTCACAGCCAGTGATAGACGCACCTCCACCTCTTGGAACATTGTACCCTCTAATTGGCAATTTGGACAAACCTTCACTGGCAAGAATTTTAGGGTCTAG 777 0.4981 MAVVHIITIVSFLALLTSTQAKIPGVYSGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLSCGACFEIKCANDPSWCHPGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVNYRRVPCRKQGGIRFTINGFRYFNLVLITNVGGAGDIMRVSVKGSKSGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0282 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lal6g0282 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lal6g0282 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lal6g0282 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Lal6g0282 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Lal6g0282 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Lal6g0282 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Lal6g0282 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Lal6g0282 258 PANTHER EXPANSIN-A15 6 257 IPR002963 GO:0009664
Lal6g0282 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Lal6g0282 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Lal6g0282 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Lal6g0282 258 Gene3D - 164 256 IPR036749 -
Lal6g0282 258 PANTHER EXPANSIN-A4 6 257 - -
Lal6g0282 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Lal6g0282 258 SMART dpbb_1 67 154 IPR007112 -
Lal6g0282 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Lal6g0282 258 Gene3D - 18 160 IPR036908 -
Lal6g0282 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0282 Lal-Chr6 1853604 1855918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0282 1 258 Expansin Gene Family AT2G39700 83.333 1.24e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0282 - - gmx:100809018 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0282 6 1853604 1855918 Lal18g1325 18 15713540 15715012 ECH
Lal1g2180 1 23798884 23802473 Lal6g0282 6 1853604 1855918 ECH
Lal9g1593 9 18300590 18304522 Lal6g0282 6 1853604 1855918 ECH
Lal2g1842 2 20747588 20750373 Lal6g0282 6 1853604 1855918 ECH
Lal9g0224 9 1379058 1382124 Lal6g0282 6 1853604 1855918 ECH
Lal1g0322 1 1954767 1956562 Lal6g0282 6 1853604 1855918 ECH
Lal25g0141 25 886327 890321 Lal6g0282 6 1853604 1855918 ECH
Lal6g0282 6 1853604 1855918 Lal6g0282 6 1853604 1855918 ECH
Lal18g1325 18 15713540 15715012 Lal6g0282 6 1853604 1855918 LSH
Lal18g1325 18 15713540 15715012 Lal6g0282 6 1853604 1855918 PCT
Lal6g0282 6 1853604 1855918 Lal18g1325 18 15713540 15715012 PCT